Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL28A1Q2UY09 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 FAM201B-201ENST00000458407 597 ntBASIC21.08■□□□□ 0.97
COL28A1Q2UY09 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 MIR4651-201ENST00000582622 73 ntBASIC21.08■□□□□ 0.97
COL28A1Q2UY09 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.08■□□□□ 0.97
COL28A1Q2UY09 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL28A1Q2UY09 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.08■□□□□ 0.96
COL28A1Q2UY09 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 AC131274.2-201ENST00000580697 1507 ntBASIC21.07■□□□□ 0.96
COL28A1Q2UY09 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL28A1Q2UY09 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL28A1Q2UY09 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.05■□□□□ 0.96
COL28A1Q2UY09 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
COL28A1Q2UY09 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL28A1Q2UY09 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL28A1Q2UY09 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL28A1Q2UY09 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL28A1Q2UY09 AC142086.2-201ENST00000569753 217 ntBASIC21.05■□□□□ 0.96
COL28A1Q2UY09 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.05■□□□□ 0.96
COL28A1Q2UY09 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL28A1Q2UY09 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL28A1Q2UY09 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.04■□□□□ 0.96
COL28A1Q2UY09 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.04■□□□□ 0.96
COL28A1Q2UY09 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 AC141586.4-201ENST00000624558 1573 ntBASIC21.03■□□□□ 0.96
COL28A1Q2UY09 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 AC008687.6-201ENST00000596318 630 ntBASIC21.03■□□□□ 0.96
COL28A1Q2UY09 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COL28A1Q2UY09 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL28A1Q2UY09 AL022069.1-201ENST00000568025 1636 ntBASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 151.6 ms