Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.45■□□□□ 0.86
CDH12P55289 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDH12P55289 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDH12P55289 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDH12P55289 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.44■□□□□ 0.86
CDH12P55289 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDH12P55289 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDH12P55289 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDH12P55289 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.44■□□□□ 0.86
CDH12P55289 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CDH12P55289 AC087742.1-201ENST00000575880 1738 ntBASIC20.44■□□□□ 0.86
CDH12P55289 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH12P55289 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDH12P55289 AL137060.1-201ENST00000618151 2648 ntBASIC20.43■□□□□ 0.86
CDH12P55289 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH12P55289 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CDH12P55289 AC144652.1-201ENST00000609974 1624 ntBASIC20.43■□□□□ 0.86
CDH12P55289 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH12P55289 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CDH12P55289 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CDH12P55289 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDH12P55289 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDH12P55289 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDH12P55289 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDH12P55289 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDH12P55289 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.42■□□□□ 0.86
CDH12P55289 RARRES2P1-201ENST00000474487 481 ntBASIC20.42■□□□□ 0.86
CDH12P55289 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.42■□□□□ 0.86
CDH12P55289 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CDH12P55289 AC005703.6-201ENST00000623265 1329 ntBASIC20.42■□□□□ 0.86
CDH12P55289 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.42■□□□□ 0.86
CDH12P55289 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.42■□□□□ 0.86
CDH12P55289 FBXW4P1-201ENST00000426721 2239 ntBASIC20.42■□□□□ 0.86
CDH12P55289 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CDH12P55289 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CDH12P55289 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CDH12P55289 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.41■□□□□ 0.86
CDH12P55289 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CDH12P55289 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CDH12P55289 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CDH12P55289 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CDH12P55289 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CDH12P55289 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CDH12P55289 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CDH12P55289 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.4■□□□□ 0.86
CDH12P55289 AC092028.1-203ENST00000608262 953 ntBASIC20.4■□□□□ 0.86
CDH12P55289 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.4■□□□□ 0.86
CDH12P55289 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CDH12P55289 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CDH12P55289 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.39■□□□□ 0.86
CDH12P55289 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CDH12P55289 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CDH12P55289 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.39■□□□□ 0.86
CDH12P55289 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.39■□□□□ 0.85
CDH12P55289 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDH12P55289 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.39■□□□□ 0.85
CDH12P55289 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.39■□□□□ 0.85
CDH12P55289 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.39■□□□□ 0.85
CDH12P55289 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDH12P55289 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CDH12P55289 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.38■□□□□ 0.85
CDH12P55289 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
CDH12P55289 KRT125P-201ENST00000546827 989 ntBASIC20.38■□□□□ 0.85
CDH12P55289 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDH12P55289 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDH12P55289 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDH12P55289 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CDH12P55289 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDH12P55289 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CDH12P55289 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDH12P55289 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDH12P55289 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CDH12P55289 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CDH12P55289 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH12P55289 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.37■□□□□ 0.85
CDH12P55289 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH12P55289 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CDH12P55289 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.37■□□□□ 0.85
CDH12P55289 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.37■□□□□ 0.85
CDH12P55289 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CDH12P55289 Z92544.1-202ENST00000571933 1220 ntBASIC20.37■□□□□ 0.85
CDH12P55289 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH12P55289 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH12P55289 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH12P55289 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CDH12P55289 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDH12P55289 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CDH12P55289 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH12P55289 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CDH12P55289 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH12P55289 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
CDH12P55289 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH12P55289 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH12P55289 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH12P55289 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.36■□□□□ 0.85
CDH12P55289 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDH12P55289 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.36■□□□□ 0.85
CDH12P55289 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.36■□□□□ 0.85
CDH12P55289 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CDH12P55289 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms