Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SOX3P41225 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX3P41225 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX3P41225 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SOX3P41225 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX3P41225 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.6■□□□□ 0.89
SOX3P41225 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SOX3P41225 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
SOX3P41225 AC142381.2-201ENST00000566120 298 ntBASIC20.6■□□□□ 0.89
SOX3P41225 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.6■□□□□ 0.89
SOX3P41225 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SOX3P41225 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
SOX3P41225 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.6■□□□□ 0.89
SOX3P41225 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SOX3P41225 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.6■□□□□ 0.89
SOX3P41225 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SOX3P41225 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX3P41225 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX3P41225 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SOX3P41225 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX3P41225 C1orf229-201ENST00000623686 2258 ntBASIC20.59■□□□□ 0.89
SOX3P41225 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.59■□□□□ 0.89
SOX3P41225 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.59■□□□□ 0.89
SOX3P41225 AL355001.2-201ENST00000620617 1191 ntBASIC20.59■□□□□ 0.89
SOX3P41225 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.59■□□□□ 0.89
SOX3P41225 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SOX3P41225 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX3P41225 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.59■□□□□ 0.89
SOX3P41225 FP325331.1-202ENST00000623531 1380 ntBASIC20.59■□□□□ 0.89
SOX3P41225 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.58■□□□□ 0.89
SOX3P41225 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SOX3P41225 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.58■□□□□ 0.89
SOX3P41225 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SOX3P41225 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SOX3P41225 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SOX3P41225 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SOX3P41225 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.58■□□□□ 0.89
SOX3P41225 SUDS3P1-201ENST00000505831 966 ntBASIC20.58■□□□□ 0.89
SOX3P41225 AC136469.2-201ENST00000623944 1028 ntBASIC20.58■□□□□ 0.89
SOX3P41225 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SOX3P41225 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SOX3P41225 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SOX3P41225 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX3P41225 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX3P41225 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX3P41225 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SOX3P41225 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SOX3P41225 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX3P41225 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX3P41225 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SOX3P41225 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.57■□□□□ 0.88
SOX3P41225 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SOX3P41225 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX3P41225 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX3P41225 AC079630.1-202ENST00000618127 1840 ntBASIC20.57■□□□□ 0.88
SOX3P41225 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX3P41225 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SOX3P41225 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX3P41225 LINC01529-204ENST00000636474 1715 ntBASIC20.56■□□□□ 0.88
SOX3P41225 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.56■□□□□ 0.88
SOX3P41225 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SOX3P41225 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX3P41225 AF213884.3-201ENST00000563833 479 ntBASIC20.56■□□□□ 0.88
SOX3P41225 DUX4L4-201ENST00000566884 1269 ntBASIC20.56■□□□□ 0.88
SOX3P41225 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
SOX3P41225 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX3P41225 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX3P41225 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.56■□□□□ 0.88
SOX3P41225 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
SOX3P41225 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SOX3P41225 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX3P41225 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX3P41225 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SOX3P41225 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SOX3P41225 AP001330.3-201ENST00000520123 633 ntBASIC20.55■□□□□ 0.88
SOX3P41225 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.55■□□□□ 0.88
SOX3P41225 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SOX3P41225 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.55■□□□□ 0.88
SOX3P41225 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.55■□□□□ 0.88
SOX3P41225 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX3P41225 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX3P41225 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SOX3P41225 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SOX3P41225 ANOS2P-203ENST00000472227 1816 ntBASIC20.55■□□□□ 0.88
SOX3P41225 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SOX3P41225 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.55■□□□□ 0.88
SOX3P41225 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.54■□□□□ 0.88
SOX3P41225 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX3P41225 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.54■□□□□ 0.88
SOX3P41225 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX3P41225 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
SOX3P41225 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX3P41225 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.54■□□□□ 0.88
SOX3P41225 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.54■□□□□ 0.88
SOX3P41225 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.54■□□□□ 0.88
SOX3P41225 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX3P41225 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.54■□□□□ 0.88
SOX3P41225 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.54■□□□□ 0.88
SOX3P41225 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SOX3P41225 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms