Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFC3P40938 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RFC3P40938 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.11■□□□□ 0.81
RFC3P40938 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RFC3P40938 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFC3P40938 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFC3P40938 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
RFC3P40938 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.1■□□□□ 0.81
RFC3P40938 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFC3P40938 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
RFC3P40938 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.1■□□□□ 0.81
RFC3P40938 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RFC3P40938 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.1■□□□□ 0.81
RFC3P40938 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RFC3P40938 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFC3P40938 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFC3P40938 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFC3P40938 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFC3P40938 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
RFC3P40938 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.09■□□□□ 0.81
RFC3P40938 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.09■□□□□ 0.81
RFC3P40938 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.09■□□□□ 0.81
RFC3P40938 MIR572-201ENST00000384983 95 ntBASIC20.09■□□□□ 0.81
RFC3P40938 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RFC3P40938 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.09■□□□□ 0.81
RFC3P40938 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RFC3P40938 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.09■□□□□ 0.81
RFC3P40938 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
RFC3P40938 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
RFC3P40938 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RFC3P40938 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RFC3P40938 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.08■□□□□ 0.81
RFC3P40938 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RFC3P40938 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RFC3P40938 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RFC3P40938 AC012414.1-201ENST00000556676 535 ntBASIC20.08■□□□□ 0.81
RFC3P40938 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RFC3P40938 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
RFC3P40938 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RFC3P40938 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
RFC3P40938 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
RFC3P40938 AC079834.2-201ENST00000609776 1949 ntBASIC20.08■□□□□ 0.8
RFC3P40938 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.07■□□□□ 0.8
RFC3P40938 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.07■□□□□ 0.8
RFC3P40938 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RFC3P40938 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFC3P40938 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RFC3P40938 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFC3P40938 YBX1P1-201ENST00000445822 960 ntBASIC20.07■□□□□ 0.8
RFC3P40938 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.07■□□□□ 0.8
RFC3P40938 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.07■□□□□ 0.8
RFC3P40938 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
RFC3P40938 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFC3P40938 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.07■□□□□ 0.8
RFC3P40938 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFC3P40938 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RFC3P40938 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFC3P40938 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RFC3P40938 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RFC3P40938 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFC3P40938 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFC3P40938 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFC3P40938 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.06■□□□□ 0.8
RFC3P40938 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.06■□□□□ 0.8
RFC3P40938 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.06■□□□□ 0.8
RFC3P40938 AL358852.1-201ENST00000623174 1268 ntBASIC20.06■□□□□ 0.8
RFC3P40938 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFC3P40938 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
RFC3P40938 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
RFC3P40938 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.05■□□□□ 0.8
RFC3P40938 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
RFC3P40938 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.05■□□□□ 0.8
RFC3P40938 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFC3P40938 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC3P40938 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC3P40938 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
RFC3P40938 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC3P40938 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFC3P40938 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.04■□□□□ 0.8
RFC3P40938 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC3P40938 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC3P40938 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.04■□□□□ 0.8
RFC3P40938 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.04■□□□□ 0.8
RFC3P40938 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.04■□□□□ 0.8
RFC3P40938 AP005435.1-201ENST00000529293 1178 ntBASIC20.04■□□□□ 0.8
RFC3P40938 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.04■□□□□ 0.8
RFC3P40938 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC3P40938 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.04■□□□□ 0.8
RFC3P40938 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFC3P40938 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFC3P40938 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms