Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	SED5	YLR026C	1023 nt		4.35	□□□□□ -1.71
SHP1	P34223	YMR178W	YMR178W	825 nt		4.35	□□□□□ -1.71
SHP1	P34223	SSP2	YOR242C	1116 nt		4.35	□□□□□ -1.71
SHP1	P34223	EFM2	YBR271W	1260 nt		4.35	□□□□□ -1.71
SHP1	P34223	RIA1	YNL163C	3333 nt		4.35	□□□□□ -1.71
SHP1	P34223	PPQ1	YPL179W	1650 nt		4.35	□□□□□ -1.71
SHP1	P34223	MDR1	YGR100W	2853 nt		4.35	□□□□□ -1.71
SHP1	P34223	RFT1	YBL020W	1725 nt		4.35	□□□□□ -1.71
SHP1	P34223	PRP28	YDR243C	1767 nt		4.35	□□□□□ -1.71
SHP1	P34223	PTA1	YAL043C	2358 nt		4.34	□□□□□ -1.71
SHP1	P34223	MBR1	YKL093W	1020 nt		4.34	□□□□□ -1.71
SHP1	P34223	CDC73	YLR418C	1182 nt		4.34	□□□□□ -1.71
SHP1	P34223	CTL1	YMR180C	963 nt		4.34	□□□□□ -1.71
SHP1	P34223	YNR061C	YNR061C	660 nt		4.34	□□□□□ -1.71
SHP1	P34223	YOL019W-A	YOL019W-A	153 nt		4.34	□□□□□ -1.71
SHP1	P34223	YOL166C	YOL166C	339 nt		4.34	□□□□□ -1.71
SHP1	P34223	VAM3	YOR106W	852 nt		4.34	□□□□□ -1.71
SHP1	P34223	LAP3	YNL239W	1365 nt		4.34	□□□□□ -1.71
SHP1	P34223	TYR1	YBR166C	1359 nt		4.34	□□□□□ -1.71
SHP1	P34223	YPL260W	YPL260W	1656 nt		4.34	□□□□□ -1.71
SHP1	P34223	HRK1	YOR267C	2280 nt		4.34	□□□□□ -1.72
SHP1	P34223	FZO1	YBR179C	2568 nt		4.33	□□□□□ -1.72
SHP1	P34223	MBP1	YDL056W	2502 nt		4.33	□□□□□ -1.72
SHP1	P34223	SAC1	YKL212W	1872 nt		4.33	□□□□□ -1.72
SHP1	P34223	CLN2	YPL256C	1638 nt		4.33	□□□□□ -1.72
SHP1	P34223	BIK1	YCL029C	1323 nt		4.33	□□□□□ -1.72
SHP1	P34223	DID4	YKL002W	699 nt		4.33	□□□□□ -1.72
SHP1	P34223	CPR3	YML078W	549 nt		4.33	□□□□□ -1.72
SHP1	P34223	YBL036C	YBL036C	774 nt		4.33	□□□□□ -1.72
SHP1	P34223	YMR130W	YMR130W	909 nt		4.33	□□□□□ -1.72
SHP1	P34223	BAG7	YOR134W	1230 nt		4.33	□□□□□ -1.72
SHP1	P34223	MRM1	YOR201C	1239 nt		4.33	□□□□□ -1.72
SHP1	P34223	MRPL37	YBR268W	318 nt		4.33	□□□□□ -1.72
SHP1	P34223	KTR7	YIL085C	1554 nt		4.32	□□□□□ -1.72
SHP1	P34223	YGL258W-A	YGL258W-A	234 nt		4.32	□□□□□ -1.72
SHP1	P34223	YPL114W	YPL114W	420 nt		4.32	□□□□□ -1.72
SHP1	P34223	SHE3	YBR130C	1278 nt		4.32	□□□□□ -1.72
SHP1	P34223	YMR1	YJR110W	2067 nt		4.32	□□□□□ -1.72
SHP1	P34223	ARO80	YDR421W	2853 nt		4.31	□□□□□ -1.72
SHP1	P34223	PCL2	YDL127W	927 nt		4.31	□□□□□ -1.72
SHP1	P34223	YER067C-A	YER067C-A	324 nt		4.31	□□□□□ -1.72
SHP1	P34223	OKP1	YGR179C	1221 nt		4.31	□□□□□ -1.72
SHP1	P34223	HIS6	YIL020C	786 nt		4.31	□□□□□ -1.72
SHP1	P34223	JLP1	YLL057C	1239 nt		4.31	□□□□□ -1.72
SHP1	P34223	IMP1	YMR150C	573 nt		4.31	□□□□□ -1.72
SHP1	P34223	AIM39	YOL053W	1188 nt		4.31	□□□□□ -1.72
SHP1	P34223	MED7	YOL135C	669 nt		4.31	□□□□□ -1.72
SHP1	P34223	RIM21	YNL294C	1602 nt		4.31	□□□□□ -1.72
SHP1	P34223	KAR5	YMR065W	1515 nt		4.31	□□□□□ -1.72
SHP1	P34223	MMT1	YMR177W	1533 nt		4.31	□□□□□ -1.72
SHP1	P34223	RKM2	YDR198C	1440 nt		4.3	□□□□□ -1.72
SHP1	P34223	NPL4	YBR170C	1743 nt		4.3	□□□□□ -1.72
SHP1	P34223	EMP47	YFL048C	1338 nt		4.3	□□□□□ -1.72
SHP1	P34223	YHR069C-A	YHR069C-A	363 nt		4.3	□□□□□ -1.72
SHP1	P34223	RPC17	YJL011C	486 nt		4.3	□□□□□ -1.72
SHP1	P34223	NIT3	YLR351C	876 nt		4.3	□□□□□ -1.72
SHP1	P34223	YMR315W	YMR315W	1050 nt		4.3	□□□□□ -1.72
SHP1	P34223	YPL025C	YPL025C	558 nt		4.3	□□□□□ -1.72
SHP1	P34223	MSS2	YDL107W	1056 nt		4.29	□□□□□ -1.72
SHP1	P34223	DAS2	YDR020C	699 nt		4.29	□□□□□ -1.72
SHP1	P34223	MAG1	YER142C	891 nt		4.29	□□□□□ -1.72
SHP1	P34223	YGL193C	YGL193C	312 nt		4.29	□□□□□ -1.72
SHP1	P34223	VMA22	YHR060W	546 nt		4.29	□□□□□ -1.72
SHP1	P34223	IMP3	YHR148W	552 nt		4.29	□□□□□ -1.72
SHP1	P34223	LAC1	YKL008C	1257 nt		4.29	□□□□□ -1.72
SHP1	P34223	KTR2	YKR061W	1278 nt		4.29	□□□□□ -1.72
SHP1	P34223	YLR125W	YLR125W	411 nt		4.29	□□□□□ -1.72
SHP1	P34223	GLO4	YOR040W	858 nt		4.29	□□□□□ -1.72
SHP1	P34223	CNS1	YBR155W	1158 nt		4.29	□□□□□ -1.72
SHP1	P34223	TIF4632	YGL049C	2745 nt		4.29	□□□□□ -1.72
SHP1	P34223	KAP114	YGL241W	3015 nt		4.28	□□□□□ -1.72
SHP1	P34223	SRO9	YCL037C	1305 nt		4.28	□□□□□ -1.72
SHP1	P34223	USA1	YML029W	2517 nt		4.28	□□□□□ -1.72
SHP1	P34223	PRP19	YLL036C	1512 nt		4.28	□□□□□ -1.72
SHP1	P34223	NGL3	YML118W	1518 nt		4.28	□□□□□ -1.72
SHP1	P34223	YHB1	YGR234W	1200 nt		4.28	□□□□□ -1.72
SHP1	P34223	SOL4	YGR248W	768 nt		4.28	□□□□□ -1.72
SHP1	P34223	SDS3	YIL084C	984 nt		4.28	□□□□□ -1.72
SHP1	P34223	EBP2	YKL172W	1284 nt		4.28	□□□□□ -1.72
SHP1	P34223	SEC65	YML105C	822 nt		4.28	□□□□□ -1.72
SHP1	P34223	AAH1	YNL141W	1044 nt		4.28	□□□□□ -1.72
SHP1	P34223	TEX1	YNL253W	1269 nt		4.28	□□□□□ -1.72
SHP1	P34223	VPS21	YOR089C	633 nt		4.28	□□□□□ -1.72
SHP1	P34223	MDM38	YOL027C	1722 nt		4.28	□□□□□ -1.72
SHP1	P34223	FAS2	YPL231W	5664 nt		4.28	□□□□□ -1.72
SHP1	P34223	MRS2	YOR334W	1413 nt		4.28	□□□□□ -1.72
SHP1	P34223	SSU1	YPL092W	1377 nt		4.27	□□□□□ -1.73
SHP1	P34223	RRI1	YDL216C	1323 nt		4.27	□□□□□ -1.73
SHP1	P34223	GRC3	YLL035W	1899 nt		4.27	□□□□□ -1.73
SHP1	P34223	snR7-L	snR7-L	214 nt		4.27	□□□□□ -1.73
SHP1	P34223	RPL18B	YNL301C	561 nt		4.27	□□□□□ -1.73
SHP1	P34223	BSC1	YDL037C	987 nt		4.26	□□□□□ -1.73
SHP1	P34223	YER138W-A	YER138W-A	105 nt		4.26	□□□□□ -1.73
SHP1	P34223	ACT1	YFL039C	1128 nt		4.26	□□□□□ -1.73
SHP1	P34223	YLR311C	YLR311C	348 nt		4.26	□□□□□ -1.73
SHP1	P34223	YBL094C	YBL094C	333 nt		4.26	□□□□□ -1.73
SHP1	P34223	YBL107W-A	YBL107W-A	105 nt		4.26	□□□□□ -1.73
SHP1	P34223	CYM1	YDR430C	2970 nt		4.26	□□□□□ -1.73
SHP1	P34223	YDL124W	YDL124W	939 nt		4.25	□□□□□ -1.73
SHP1	P34223	NBP2	YDR162C	711 nt		4.25	□□□□□ -1.73

Retrieved 100 of 7,029 protein–RNA pairs in 13.5 ms