Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC27.28■■□□□ 1.96
COL4A1P02462 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC27.28■■□□□ 1.96
COL4A1P02462 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC27.28■■□□□ 1.96
COL4A1P02462 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL4A1P02462 AC004854.2-201ENST00000608450 1441 ntBASIC27.28■■□□□ 1.96
COL4A1P02462 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
COL4A1P02462 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC27.28■■□□□ 1.96
COL4A1P02462 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A1P02462 AC006015.1-201ENST00000429970 570 ntBASIC27.27■■□□□ 1.96
COL4A1P02462 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC27.27■■□□□ 1.96
COL4A1P02462 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC27.27■■□□□ 1.96
COL4A1P02462 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A1P02462 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC27.27■■□□□ 1.96
COL4A1P02462 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC27.27■■□□□ 1.96
COL4A1P02462 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC27.27■■□□□ 1.96
COL4A1P02462 MFF-208ENST00000409616 1247 ntTSL 5 BASIC27.27■■□□□ 1.96
COL4A1P02462 GXYLT1P2-201ENST00000433312 1230 ntBASIC27.27■■□□□ 1.96
COL4A1P02462 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC27.27■■□□□ 1.96
COL4A1P02462 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A1P02462 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL4A1P02462 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL4A1P02462 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL4A1P02462 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
COL4A1P02462 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL4A1P02462 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC27.26■■□□□ 1.95
COL4A1P02462 SMUG1P1-201ENST00000590640 811 ntBASIC27.26■■□□□ 1.95
COL4A1P02462 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC27.26■■□□□ 1.95
COL4A1P02462 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL4A1P02462 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL4A1P02462 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
COL4A1P02462 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL4A1P02462 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL4A1P02462 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL4A1P02462 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC27.25■■□□□ 1.95
COL4A1P02462 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL4A1P02462 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC27.25■■□□□ 1.95
COL4A1P02462 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
COL4A1P02462 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC27.25■■□□□ 1.95
COL4A1P02462 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC27.25■■□□□ 1.95
COL4A1P02462 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
COL4A1P02462 AP004607.4-201ENST00000530158 1459 ntBASIC27.25■■□□□ 1.95
COL4A1P02462 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
COL4A1P02462 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC27.24■■□□□ 1.95
COL4A1P02462 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC27.24■■□□□ 1.95
COL4A1P02462 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
COL4A1P02462 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC27.24■■□□□ 1.95
COL4A1P02462 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
COL4A1P02462 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
COL4A1P02462 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
COL4A1P02462 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
COL4A1P02462 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A1P02462 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A1P02462 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC27.22■■□□□ 1.95
COL4A1P02462 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC27.22■■□□□ 1.95
COL4A1P02462 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A1P02462 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC27.22■■□□□ 1.95
COL4A1P02462 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A1P02462 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
COL4A1P02462 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL4A1P02462 ID1-201ENST00000376105 1233 ntBASIC27.21■■□□□ 1.95
COL4A1P02462 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL4A1P02462 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL4A1P02462 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
COL4A1P02462 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC27.21■■□□□ 1.95
COL4A1P02462 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC27.21■■□□□ 1.95
COL4A1P02462 STX7-201ENST00000367937 1090 ntTSL 5 BASIC27.21■■□□□ 1.95
COL4A1P02462 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
COL4A1P02462 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC27.2■■□□□ 1.95
COL4A1P02462 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
COL4A1P02462 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC27.2■■□□□ 1.94
COL4A1P02462 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC27.2■■□□□ 1.94
COL4A1P02462 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
COL4A1P02462 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC27.2■■□□□ 1.94
COL4A1P02462 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC27.2■■□□□ 1.94
COL4A1P02462 AC073111.5-205ENST00000641717 521 ntBASIC27.2■■□□□ 1.94
COL4A1P02462 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
COL4A1P02462 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC27.19■■□□□ 1.94
COL4A1P02462 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC27.19■■□□□ 1.94
COL4A1P02462 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC27.19■■□□□ 1.94
COL4A1P02462 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
COL4A1P02462 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
COL4A1P02462 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC27.19■■□□□ 1.94
COL4A1P02462 DBI-210ENST00000542275 757 ntTSL 5 BASIC27.19■■□□□ 1.94
COL4A1P02462 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC27.19■■□□□ 1.94
COL4A1P02462 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL4A1P02462 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC27.19■■□□□ 1.94
COL4A1P02462 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
COL4A1P02462 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
COL4A1P02462 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
COL4A1P02462 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
COL4A1P02462 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
COL4A1P02462 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL4A1P02462 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC27.17■■□□□ 1.94
COL4A1P02462 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
COL4A1P02462 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL4A1P02462 HLA-L-209ENST00000420110 1011 ntBASIC27.17■■□□□ 1.94
COL4A1P02462 GALNS-213ENST00000569433 723 ntTSL 3 BASIC27.17■■□□□ 1.94
COL4A1P02462 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL4A1P02462 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
COL4A1P02462 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms