Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.38■□□□□ 0.53
ABCA1O95477 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.38■□□□□ 0.53
ABCA1O95477 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA1O95477 AC080038.1-201ENST00000611274 1154 ntBASIC18.38■□□□□ 0.53
ABCA1O95477 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA1O95477 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ABCA1O95477 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ABCA1O95477 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCA1O95477 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 AC142381.3-201ENST00000568208 1670 ntBASIC18.37■□□□□ 0.53
ABCA1O95477 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ABCA1O95477 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.37■□□□□ 0.53
ABCA1O95477 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
ABCA1O95477 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCA1O95477 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.37■□□□□ 0.53
ABCA1O95477 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCA1O95477 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ABCA1O95477 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
ABCA1O95477 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCA1O95477 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
ABCA1O95477 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.37■□□□□ 0.53
ABCA1O95477 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.37■□□□□ 0.53
ABCA1O95477 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ABCA1O95477 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ABCA1O95477 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA1O95477 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.36■□□□□ 0.53
ABCA1O95477 HLA-L-211ENST00000482052 1765 ntBASIC18.36■□□□□ 0.53
ABCA1O95477 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.36■□□□□ 0.53
ABCA1O95477 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA1O95477 FP325331.1-202ENST00000623531 1380 ntBASIC18.36■□□□□ 0.53
ABCA1O95477 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.36■□□□□ 0.53
ABCA1O95477 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.36■□□□□ 0.53
ABCA1O95477 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.36■□□□□ 0.53
ABCA1O95477 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA1O95477 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA1O95477 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA1O95477 AC004854.2-201ENST00000608450 1441 ntBASIC18.36■□□□□ 0.53
ABCA1O95477 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA1O95477 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA1O95477 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ABCA1O95477 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA1O95477 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ABCA1O95477 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ABCA1O95477 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA1O95477 OR2I1P-207ENST00000453522 948 ntBASIC18.35■□□□□ 0.53
ABCA1O95477 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.35■□□□□ 0.53
ABCA1O95477 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.35■□□□□ 0.53
ABCA1O95477 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.35■□□□□ 0.53
ABCA1O95477 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.35■□□□□ 0.53
ABCA1O95477 AC104771.1-201ENST00000603335 964 ntBASIC18.35■□□□□ 0.53
ABCA1O95477 AL499627.2-201ENST00000606283 725 ntBASIC18.35■□□□□ 0.53
ABCA1O95477 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA1O95477 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA1O95477 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA1O95477 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA1O95477 LINC01124-201ENST00000409786 2117 ntBASIC18.35■□□□□ 0.53
ABCA1O95477 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.35■□□□□ 0.53
ABCA1O95477 AC066615.1-201ENST00000640911 628 ntBASIC18.35■□□□□ 0.53
ABCA1O95477 AC073111.5-205ENST00000641717 521 ntBASIC18.35■□□□□ 0.53
ABCA1O95477 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.35■□□□□ 0.53
ABCA1O95477 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.35■□□□□ 0.53
ABCA1O95477 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA1O95477 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ABCA1O95477 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA1O95477 LINC00543-201ENST00000567234 1845 ntBASIC18.34■□□□□ 0.53
ABCA1O95477 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.34■□□□□ 0.53
ABCA1O95477 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA1O95477 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.34■□□□□ 0.53
ABCA1O95477 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.34■□□□□ 0.53
ABCA1O95477 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.34■□□□□ 0.53
ABCA1O95477 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.34■□□□□ 0.53
ABCA1O95477 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC18.34■□□□□ 0.53
ABCA1O95477 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA1O95477 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA1O95477 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA1O95477 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA1O95477 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.34■□□□□ 0.53
ABCA1O95477 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.34■□□□□ 0.53
ABCA1O95477 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA1O95477 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA1O95477 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.33■□□□□ 0.53
ABCA1O95477 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.33■□□□□ 0.53
ABCA1O95477 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ABCA1O95477 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.33■□□□□ 0.52
ABCA1O95477 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ABCA1O95477 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
ABCA1O95477 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.33■□□□□ 0.52
ABCA1O95477 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
ABCA1O95477 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
ABCA1O95477 KRT19P1-201ENST00000405746 1186 ntBASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms