Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDB3O75112 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.7■□□□□ 0.9
LDB3O75112 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
LDB3O75112 AC010525.1-201ENST00000585559 441 ntBASIC20.7■□□□□ 0.9
LDB3O75112 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.7■□□□□ 0.9
LDB3O75112 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.7■□□□□ 0.9
LDB3O75112 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDB3O75112 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LDB3O75112 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LDB3O75112 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDB3O75112 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.9
LDB3O75112 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDB3O75112 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LDB3O75112 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LDB3O75112 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.69■□□□□ 0.9
LDB3O75112 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
LDB3O75112 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.69■□□□□ 0.9
LDB3O75112 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.69■□□□□ 0.9
LDB3O75112 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.69■□□□□ 0.9
LDB3O75112 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDB3O75112 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.69■□□□□ 0.9
LDB3O75112 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDB3O75112 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDB3O75112 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB3O75112 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LDB3O75112 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB3O75112 SLC47A1P1-202ENST00000449666 945 ntBASIC20.68■□□□□ 0.9
LDB3O75112 OR2I1P-207ENST00000453522 948 ntBASIC20.68■□□□□ 0.9
LDB3O75112 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.68■□□□□ 0.9
LDB3O75112 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.68■□□□□ 0.9
LDB3O75112 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.68■□□□□ 0.9
LDB3O75112 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB3O75112 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB3O75112 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB3O75112 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LDB3O75112 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LDB3O75112 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LDB3O75112 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LDB3O75112 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LDB3O75112 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.67■□□□□ 0.9
LDB3O75112 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LDB3O75112 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.67■□□□□ 0.9
LDB3O75112 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDB3O75112 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDB3O75112 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LDB3O75112 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.67■□□□□ 0.9
LDB3O75112 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LDB3O75112 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDB3O75112 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.66■□□□□ 0.9
LDB3O75112 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB3O75112 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.66■□□□□ 0.9
LDB3O75112 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
LDB3O75112 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.66■□□□□ 0.9
LDB3O75112 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LDB3O75112 LINC01960-201ENST00000563759 1884 ntBASIC20.66■□□□□ 0.9
LDB3O75112 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDB3O75112 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.65■□□□□ 0.9
LDB3O75112 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDB3O75112 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDB3O75112 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LDB3O75112 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
LDB3O75112 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDB3O75112 EDA-201ENST00000338901 1233 ntBASIC20.65■□□□□ 0.9
LDB3O75112 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.65■□□□□ 0.9
LDB3O75112 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.65■□□□□ 0.9
LDB3O75112 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LDB3O75112 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LDB3O75112 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
LDB3O75112 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
LDB3O75112 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
LDB3O75112 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDB3O75112 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.64■□□□□ 0.89
LDB3O75112 AC008764.7-201ENST00000593779 1081 ntBASIC20.64■□□□□ 0.89
LDB3O75112 AL031432.3-201ENST00000607698 485 ntBASIC20.64■□□□□ 0.89
LDB3O75112 AL355001.2-201ENST00000620617 1191 ntBASIC20.64■□□□□ 0.89
LDB3O75112 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDB3O75112 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDB3O75112 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.64■□□□□ 0.89
LDB3O75112 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDB3O75112 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LDB3O75112 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.63■□□□□ 0.89
LDB3O75112 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LDB3O75112 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LDB3O75112 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB3O75112 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB3O75112 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB3O75112 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
LDB3O75112 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB3O75112 MIR638-201ENST00000385237 100 ntBASIC20.63■□□□□ 0.89
LDB3O75112 BX842568.3-201ENST00000418104 571 ntBASIC20.63■□□□□ 0.89
LDB3O75112 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LDB3O75112 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.63■□□□□ 0.89
LDB3O75112 AC133561.4-201ENST00000566112 224 ntBASIC20.63■□□□□ 0.89
LDB3O75112 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.63■□□□□ 0.89
LDB3O75112 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LDB3O75112 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB3O75112 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LDB3O75112 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
LDB3O75112 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
LDB3O75112 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms