Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 NME4-209ENST00000460297 1652 ntTSL 522.05■■□□□ 1.121e-11■■□□□ 11.9
CDC40O60508 NME4-204ENST00000433358 966 ntTSL 321.56■■□□□ 1.041e-11■■□□□ 11.9
CDC40O60508 NME4-206ENST00000448828 1167 ntTSL 221.1■□□□□ 0.971e-11■■□□□ 11.9
CDC40O60508 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.811e-11■■□□□ 11.9
CDC40O60508 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.14■□□□□ 0.811e-11■■□□□ 11.9
CDC40O60508 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.14■□□□□ 0.811e-11■■□□□ 11.9
CDC40O60508 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.373e-15■■□□□ 11.9
CDC40O60508 NME4-205ENST00000444498 1111 ntTSL 317.25■□□□□ 0.351e-11■■□□□ 11.9
CDC40O60508 NME4-210ENST00000468031 1861 ntTSL 217.12■□□□□ 0.331e-11■■□□□ 11.9
CDC40O60508 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.11■□□□□ 0.171e-11■■□□□ 11.9
CDC40O60508 SLC16A3-215ENST00000582946 586 ntTSL 415.69■□□□□ 0.13e-15■■□□□ 11.9
CDC40O60508 FNBP4-213ENST00000534003 2515 ntTSL 515.54■□□□□ 0.082e-7■■□□□ 11.9
CDC40O60508 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.47□□□□□ -0.091e-11■■□□□ 11.9
CDC40O60508 NME4-208ENST00000454619 719 ntTSL 513.37□□□□□ -0.271e-11■■□□□ 11.9
CDC40O60508 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.346e-7■■□□□ 11.9
CDC40O60508 NME4-203ENST00000397722 1232 ntTSL 2 BASIC12.62□□□□□ -0.391e-11■■□□□ 11.9
CDC40O60508 FNBP4-202ENST00000524696 481 ntTSL 311.67□□□□□ -0.542e-7■■□□□ 11.9
CDC40O60508 FNBP4-201ENST00000263773 3972 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.622e-7■■□□□ 11.9
CDC40O60508 FNBP4-210ENST00000531394 605 ntTSL 310.45□□□□□ -0.742e-7■■□□□ 11.9
CDC40O60508 BRD8-218ENST00000471892 687 ntTSL 310.34□□□□□ -0.752e-7■■□□□ 11.9
CDC40O60508 RPL41-201ENST00000358888 551 ntTSL 39.35□□□□□ -0.912e-7■■□□□ 11.9
CDC40O60508 BRD8-213ENST00000453824 561 ntTSL 58.94□□□□□ -0.982e-7■■□□□ 11.9
CDC40O60508 RPL41-206ENST00000552314 595 ntTSL 28.4□□□□□ -1.062e-7■■□□□ 11.9
CDC40O60508 RPL41-204ENST00000546591 699 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.152e-7■■□□□ 11.9
CDC40O60508 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.182e-7■■□□□ 11.9
CDC40O60508 FNBP4-204ENST00000525792 840 ntTSL 37.48□□□□□ -1.212e-7■■□□□ 11.9
CDC40O60508 BRD8-203ENST00000402931 2982 ntTSL 5 BASIC7.3□□□□□ -1.242e-7■■□□□ 11.9
CDC40O60508 BRD8-201ENST00000230901 3198 ntTSL 1 (best) BASIC7.12□□□□□ -1.272e-7■■□□□ 11.9
CDC40O60508 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.32e-7■■□□□ 11.9
CDC40O60508 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC6.72□□□□□ -1.332e-7■■□□□ 11.9
CDC40O60508 BRD8-224ENST00000512140 2876 ntTSL 26.61□□□□□ -1.352e-7■■□□□ 11.9
CDC40O60508 RPL41-203ENST00000546485 335 ntTSL 26.44□□□□□ -1.382e-7■■□□□ 11.9
CDC40O60508 BRD8-214ENST00000454473 3005 ntTSL 56.03□□□□□ -1.442e-7■■□□□ 11.9
CDC40O60508 BRD8-211ENST00000441656 2899 ntTSL 55.94□□□□□ -1.462e-7■■□□□ 11.9
CDC40O60508 BRD8-205ENST00000418329 2912 ntTSL 55.67□□□□□ -1.52e-7■■□□□ 11.9
CDC40O60508 RPL41-205ENST00000546654 238 ntTSL 25.34□□□□□ -1.552e-7■■□□□ 11.9
CDC40O60508 BRD8-208ENST00000428808 754 ntTSL 44.79□□□□□ -1.642e-7■■□□□ 11.9
CDC40O60508 FNBP4-207ENST00000528388 814 ntTSL 23.37□□□□□ -1.872e-7■■□□□ 11.9
CDC40O60508 FNBP4-208ENST00000529156 344 ntTSL 31.8□□□□□ -2.122e-7■■□□□ 11.9
CDC40O60508 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.732e-6■■□□□ 11.9
CDC40O60508 DUSP9-203ENST00000477033 430 ntTSL 318.47■□□□□ 0.552e-6■■□□□ 11.9
CDC40O60508 FBXO31-208ENST00000636077 660 ntTSL 520.17■□□□□ 0.823e-13■■□□□ 11.9
CDC40O60508 FBXO31-202ENST00000561664 305 ntTSL 513.14□□□□□ -0.313e-13■■□□□ 11.9
CDC40O60508 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.091e-6■■□□□ 11.9
CDC40O60508 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.051e-6■■□□□ 11.9
CDC40O60508 RABL6-210ENST00000484471 2746 ntTSL 517.8■□□□□ 0.441e-6■■□□□ 11.9
CDC40O60508 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.181e-6■■□□□ 11.9
CDC40O60508 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.11e-6■■□□□ 11.9
CDC40O60508 RABL6-208ENST00000464941 3361 ntTSL 215.5■□□□□ 0.071e-6■■□□□ 11.9
CDC40O60508 RABL6-206ENST00000436380 2547 ntAPPRIS ALT2 TSL 213.71□□□□□ -0.211e-6■■□□□ 11.9
CDC40O60508 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.261e-6■■□□□ 11.9
CDC40O60508 ANKRD11-212ENST00000567699 412 ntTSL 513.93□□□□□ -0.181e-6■■□□□ 11.8
CDC40O60508 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.82e-7■■□□□ 11.8
CDC40O60508 C2orf72-203ENST00000477463 579 ntTSL 410.8□□□□□ -0.682e-7■■□□□ 11.8
CDC40O60508 RRBP1-207ENST00000468428 2200 ntTSL 215.05■□□□□ 02e-6■■□□□ 11.8
CDC40O60508 COL18A1-206ENST00000459895 588 ntTSL 311.7□□□□□ -0.542e-15■■□□□ 11.8
CDC40O60508 HNRNPA3-203ENST00000432457 643 ntTSL 38.95□□□□□ -0.986e-11■■□□□ 11.8
CDC40O60508 ANKRD11-202ENST00000330736 8342 ntTSL 513.96□□□□□ -0.185e-7■■□□□ 11.8
CDC40O60508 ANKRD11-209ENST00000564553 471 ntTSL 312.54□□□□□ -0.45e-7■■□□□ 11.8
CDC40O60508 ANKRD11-206ENST00000562275 2762 ntTSL 512.54□□□□□ -0.45e-7■■□□□ 11.8
CDC40O60508 ANKRD11-207ENST00000562816 573 ntTSL 410.6□□□□□ -0.715e-7■■□□□ 11.8
CDC40O60508 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.765e-7■■□□□ 11.8
CDC40O60508 ANKRD11-204ENST00000378332 1982 ntTSL 219.23■□□□□ 0.675e-7■■□□□ 11.8
CDC40O60508 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.165e-7■■□□□ 11.8
CDC40O60508 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.225e-7■■□□□ 11.8
CDC40O60508 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.56■□□□□ 0.726e-7■■□□□ 11.8
CDC40O60508 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.3■□□□□ 0.26e-7■■□□□ 11.8
CDC40O60508 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.242e-6■■□□□ 11.8
CDC40O60508 DDX5-228ENST00000584279 676 ntTSL 319.09■□□□□ 0.653e-8■■□□□ 11.8
CDC40O60508 DDX5-205ENST00000577922 996 ntTSL 519.09■□□□□ 0.653e-8■■□□□ 11.8
CDC40O60508 DDX5-220ENST00000581806 576 ntTSL 414.84□□□□□ -0.033e-8■■□□□ 11.8
CDC40O60508 DDX5-232ENST00000585111 1051 ntTSL 213.86□□□□□ -0.193e-8■■□□□ 11.8
CDC40O60508 DDX5-219ENST00000581697 580 ntTSL 513.77□□□□□ -0.213e-8■■□□□ 11.8
CDC40O60508 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.19□□□□□ -0.33e-8■■□□□ 11.8
CDC40O60508 DDX5-207ENST00000578400 575 ntTSL 512.57□□□□□ -0.43e-8■■□□□ 11.8
CDC40O60508 DDX5-233ENST00000585223 699 ntTSL 210.19□□□□□ -0.783e-8■■□□□ 11.8
CDC40O60508 DDX5-231ENST00000585060 572 ntTSL 48.42□□□□□ -1.063e-8■■□□□ 11.8
CDC40O60508 EXOC3L4-207ENST00000560925 2341 ntTSL 221.67■■□□□ 1.061e-6■■□□□ 11.8
CDC40O60508 EXOC3L4-203ENST00000559661 665 ntTSL 516.57■□□□□ 0.241e-6■■□□□ 11.8
CDC40O60508 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.124e-7■■□□□ 11.7
CDC40O60508 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.73■□□□□ 0.594e-7■■□□□ 11.7
CDC40O60508 RNASET2-204ENST00000421787 1924 ntTSL 218.66■□□□□ 0.584e-7■■□□□ 11.7
CDC40O60508 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.48■□□□□ 0.554e-7■■□□□ 11.7
CDC40O60508 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.13■□□□□ 0.334e-7■■□□□ 11.7
CDC40O60508 RNASET2-201ENST00000028008 1220 ntTSL 516.78■□□□□ 0.284e-7■■□□□ 11.7
CDC40O60508 RNASET2-207ENST00000478180 963 ntTSL 516.47■□□□□ 0.234e-7■■□□□ 11.7
CDC40O60508 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.054e-7■■□□□ 11.7
CDC40O60508 RNASET2-202ENST00000358165 2445 ntTSL 215.16■□□□□ 0.024e-7■■□□□ 11.7
CDC40O60508 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.794e-7■■□□□ 11.7
CDC40O60508 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.588e-8■■□□□ 11.7
CDC40O60508 CDK6-201ENST00000265734 11612 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.688e-8■■□□□ 11.7
CDC40O60508 FLNA-212ENST00000466319 460 ntTSL 215.61■□□□□ 0.093e-13■■□□□ 11.7
CDC40O60508 SRRM2-210ENST00000572721 841 ntTSL 213.06□□□□□ -0.322e-7■■□□□ 11.7
CDC40O60508 SRRM2-211ENST00000572883 887 ntTSL 29.68□□□□□ -0.862e-7■■□□□ 11.7
CDC40O60508 PDXK-206ENST00000398085 796 ntTSL 320.13■□□□□ 0.816e-8■■□□□ 11.7
CDC40O60508 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.32■□□□□ 0.686e-8■■□□□ 11.7
CDC40O60508 ANKRD11-211ENST00000566973 442 ntTSL 219.1■□□□□ 0.656e-8■■□□□ 11.7
CDC40O60508 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.576e-8■■□□□ 11.7
CDC40O60508 PDXK-215ENST00000476313 1704 ntTSL 318.49■□□□□ 0.556e-8■■□□□ 11.7
CDC40O60508 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.4■□□□□ 0.546e-8■■□□□ 11.7
Retrieved 100 of 5,364 protein–RNA pairs in 46.6 ms