Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC12.74□□□□□ -0.37
COL28A1Q2UY09 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 STX3-207ENST00000633708 3111 ntTSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 SOD1-202ENST00000389995 865 ntTSL 3 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 IL6RP1-201ENST00000417848 1273 ntBASIC12.73□□□□□ -0.37
COL28A1Q2UY09 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 CD37-203ENST00000426897 1204 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 ALMS1P1-201ENST00000428767 921 ntBASIC12.73□□□□□ -0.37
COL28A1Q2UY09 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 AC104115.1-201ENST00000484005 623 ntBASIC12.73□□□□□ -0.37
COL28A1Q2UY09 RANBP6-202ENST00000485372 1000 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 AC103724.2-201ENST00000520355 476 ntBASIC12.73□□□□□ -0.37
COL28A1Q2UY09 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 JPT2-214ENST00000569765 782 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 AC136475.7-201ENST00000602949 592 ntBASIC12.73□□□□□ -0.37
COL28A1Q2UY09 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 AC245427.1-201ENST00000633705 760 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 VENTXP1-201ENST00000569334 2716 ntBASIC12.73□□□□□ -0.37
COL28A1Q2UY09 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 STK25-235ENST00000543554 2556 ntTSL 2 BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL28A1Q2UY09 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 AC106872.9-201ENST00000512437 1393 ntBASIC12.72□□□□□ -0.37
COL28A1Q2UY09 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL28A1Q2UY09 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms