Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 ATP6V1B1-AS1-201ENST00000422761 1129 ntTSL 2 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 IQCF4-203ENST00000428561 420 ntBASIC12.77□□□□□ -0.37
COL28A1Q2UY09 PGK1P2-201ENST00000431702 1214 ntBASIC12.77□□□□□ -0.37
COL28A1Q2UY09 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 HNRNPA1P73-201ENST00000446472 928 ntBASIC12.77□□□□□ -0.37
COL28A1Q2UY09 CHCHD2P6-201ENST00000454346 447 ntBASIC12.77□□□□□ -0.37
COL28A1Q2UY09 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 RNA5SP420-201ENST00000516997 137 ntBASIC12.77□□□□□ -0.37
COL28A1Q2UY09 ALG10-202ENST00000538927 571 ntTSL 5 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 MIR4309-201ENST00000582498 83 ntBASIC12.77□□□□□ -0.37
COL28A1Q2UY09 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC12.77□□□□□ -0.37
COL28A1Q2UY09 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 AC010335.3-201ENST00000623767 531 ntBASIC12.77□□□□□ -0.37
COL28A1Q2UY09 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 FTO-214ENST00000636218 2227 ntTSL 5 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC12.77□□□□□ -0.37
COL28A1Q2UY09 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 NCLP1-201ENST00000445357 1963 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 KLK8-203ENST00000347619 555 ntTSL 2 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 TUBB8P9-201ENST00000422534 1276 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 TUBB8P10-201ENST00000430210 1279 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 AC131235.2-201ENST00000445553 1057 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 RPL30-213ENST00000523172 274 ntTSL 5 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 PHBP18-201ENST00000546648 813 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 AL109954.3-201ENST00000615088 558 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 BX510359.7-201ENST00000619819 630 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 KRT8P38-201ENST00000441370 1430 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 MARK2P9-201ENST00000430958 1727 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 PCDHA5-203ENST00000614258 4248 ntBASIC12.76□□□□□ -0.37
COL28A1Q2UY09 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL28A1Q2UY09 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
COL28A1Q2UY09 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms