Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 SLC47A1P1-202ENST00000449666 945 ntBASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 RASA4CP-201ENST00000424092 1398 ntBASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM39Q9HCM9 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 AC099791.1-201ENST00000416440 715 ntBASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRIM39Q9HCM9 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.83■■□□□ 1.09
TRIM39Q9HCM9 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM39Q9HCM9 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM39Q9HCM9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.83■■□□□ 1.09
TRIM39Q9HCM9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.83■■□□□ 1.09
TRIM39Q9HCM9 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRIM39Q9HCM9 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.83■■□□□ 1.09
TRIM39Q9HCM9 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRIM39Q9HCM9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.83■■□□□ 1.08
TRIM39Q9HCM9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.08
TRIM39Q9HCM9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRIM39Q9HCM9 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 AC010525.1-201ENST00000585559 441 ntBASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 CA15P2-201ENST00000611168 834 ntBASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
TRIM39Q9HCM9 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM39Q9HCM9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.8■■□□□ 1.08
TRIM39Q9HCM9 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
TRIM39Q9HCM9 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM39Q9HCM9 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRIM39Q9HCM9 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.8■■□□□ 1.08
TRIM39Q9HCM9 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
TRIM39Q9HCM9 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 AC126544.1-201ENST00000580842 1059 ntBASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.79■■□□□ 1.08
TRIM39Q9HCM9 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.78■■□□□ 1.08
TRIM39Q9HCM9 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms