Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSX3Q99909 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSX3Q99909 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSX3Q99909 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSX3Q99909 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.36■□□□□ 0.53
SSX3Q99909 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
SSX3Q99909 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.36■□□□□ 0.53
SSX3Q99909 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SSX3Q99909 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.36■□□□□ 0.53
SSX3Q99909 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.36■□□□□ 0.53
SSX3Q99909 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.36■□□□□ 0.53
SSX3Q99909 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.36■□□□□ 0.53
SSX3Q99909 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SSX3Q99909 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SSX3Q99909 LINC00565-201ENST00000562710 2331 ntBASIC18.35■□□□□ 0.53
SSX3Q99909 AL117328.2-201ENST00000624617 1940 ntBASIC18.35■□□□□ 0.53
SSX3Q99909 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSX3Q99909 SRD5A1P1-201ENST00000442297 786 ntBASIC18.35■□□□□ 0.53
SSX3Q99909 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.35■□□□□ 0.53
SSX3Q99909 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SSX3Q99909 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SSX3Q99909 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
SSX3Q99909 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSX3Q99909 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSX3Q99909 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSX3Q99909 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.34■□□□□ 0.53
SSX3Q99909 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SSX3Q99909 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.34■□□□□ 0.53
SSX3Q99909 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSX3Q99909 AL139246.5-201ENST00000606645 996 ntBASIC18.34■□□□□ 0.53
SSX3Q99909 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSX3Q99909 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSX3Q99909 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.34■□□□□ 0.53
SSX3Q99909 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SSX3Q99909 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.33■□□□□ 0.53
SSX3Q99909 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX3Q99909 AC096631.2-201ENST00000436136 790 ntBASIC18.33■□□□□ 0.52
SSX3Q99909 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.33■□□□□ 0.52
SSX3Q99909 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.33■□□□□ 0.52
SSX3Q99909 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.33■□□□□ 0.52
SSX3Q99909 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SSX3Q99909 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX3Q99909 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX3Q99909 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SSX3Q99909 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.33■□□□□ 0.52
SSX3Q99909 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX3Q99909 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX3Q99909 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SSX3Q99909 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SSX3Q99909 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SSX3Q99909 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SSX3Q99909 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.32■□□□□ 0.52
SSX3Q99909 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX3Q99909 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX3Q99909 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.32■□□□□ 0.52
SSX3Q99909 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SSX3Q99909 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX3Q99909 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX3Q99909 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.32■□□□□ 0.52
SSX3Q99909 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SSX3Q99909 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
SSX3Q99909 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SSX3Q99909 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC18.32■□□□□ 0.52
SSX3Q99909 AC141586.4-201ENST00000624558 1573 ntBASIC18.32■□□□□ 0.52
SSX3Q99909 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX3Q99909 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SSX3Q99909 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.32■□□□□ 0.52
SSX3Q99909 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SSX3Q99909 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SSX3Q99909 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.31■□□□□ 0.52
SSX3Q99909 EP400NL-214ENST00000641289 2402 ntBASIC18.31■□□□□ 0.52
SSX3Q99909 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.31■□□□□ 0.52
SSX3Q99909 AC019069.1-201ENST00000610008 1333 ntBASIC18.31■□□□□ 0.52
SSX3Q99909 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.31■□□□□ 0.52
SSX3Q99909 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.31■□□□□ 0.52
SSX3Q99909 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX3Q99909 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.3■□□□□ 0.52
SSX3Q99909 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SSX3Q99909 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.3■□□□□ 0.52
SSX3Q99909 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.3■□□□□ 0.52
SSX3Q99909 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.3■□□□□ 0.52
SSX3Q99909 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms