Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
LYSMD1Q96S90 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
LYSMD1Q96S90 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC22.05■■□□□ 1.12
LYSMD1Q96S90 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
LYSMD1Q96S90 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
LYSMD1Q96S90 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 AC091305.1-201ENST00000479476 895 ntBASIC22.04■■□□□ 1.12
LYSMD1Q96S90 AF213884.3-201ENST00000563833 479 ntBASIC22.04■■□□□ 1.12
LYSMD1Q96S90 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LYSMD1Q96S90 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.03■■□□□ 1.12
LYSMD1Q96S90 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
LYSMD1Q96S90 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
LYSMD1Q96S90 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.03■■□□□ 1.12
LYSMD1Q96S90 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.03■■□□□ 1.12
LYSMD1Q96S90 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.03■■□□□ 1.12
LYSMD1Q96S90 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LYSMD1Q96S90 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LYSMD1Q96S90 RASA4CP-201ENST00000424092 1398 ntBASIC22.02■■□□□ 1.12
LYSMD1Q96S90 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LYSMD1Q96S90 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.02■■□□□ 1.12
LYSMD1Q96S90 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.02■■□□□ 1.12
LYSMD1Q96S90 AC068587.7-201ENST00000641602 218 ntBASIC22.02■■□□□ 1.12
LYSMD1Q96S90 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
LYSMD1Q96S90 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.02■■□□□ 1.11
LYSMD1Q96S90 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 AP005435.1-201ENST00000529293 1178 ntBASIC22.01■■□□□ 1.11
LYSMD1Q96S90 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
LYSMD1Q96S90 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LYSMD1Q96S90 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
LYSMD1Q96S90 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC22■■□□□ 1.11
LYSMD1Q96S90 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22■■□□□ 1.11
LYSMD1Q96S90 AC099791.1-201ENST00000416440 715 ntBASIC22■■□□□ 1.11
LYSMD1Q96S90 AC142381.2-201ENST00000566120 298 ntBASIC22■■□□□ 1.11
LYSMD1Q96S90 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22■■□□□ 1.11
LYSMD1Q96S90 AC008764.7-201ENST00000593779 1081 ntBASIC22■■□□□ 1.11
LYSMD1Q96S90 MAG-206ENST00000597035 542 ntTSL 4 BASIC22■■□□□ 1.11
LYSMD1Q96S90 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22■■□□□ 1.11
LYSMD1Q96S90 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LYSMD1Q96S90 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
LYSMD1Q96S90 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22■■□□□ 1.11
LYSMD1Q96S90 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LYSMD1Q96S90 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.99■■□□□ 1.11
LYSMD1Q96S90 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
LYSMD1Q96S90 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LYSMD1Q96S90 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.99■■□□□ 1.11
LYSMD1Q96S90 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
LYSMD1Q96S90 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 LINC01960-201ENST00000563759 1884 ntBASIC21.97■■□□□ 1.11
LYSMD1Q96S90 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 CA15P2-201ENST00000611168 834 ntBASIC21.97■■□□□ 1.11
LYSMD1Q96S90 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LYSMD1Q96S90 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms