Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTP4A1Q93096 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.81■□□□□ 0.76
PTP4A1Q93096 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
PTP4A1Q93096 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.81■□□□□ 0.76
PTP4A1Q93096 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTP4A1Q93096 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTP4A1Q93096 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.81■□□□□ 0.76
PTP4A1Q93096 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTP4A1Q93096 LINC01529-204ENST00000636474 1715 ntBASIC19.81■□□□□ 0.76
PTP4A1Q93096 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.81■□□□□ 0.76
PTP4A1Q93096 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.8■□□□□ 0.76
PTP4A1Q93096 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTP4A1Q93096 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTP4A1Q93096 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTP4A1Q93096 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTP4A1Q93096 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTP4A1Q93096 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.8■□□□□ 0.76
PTP4A1Q93096 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.8■□□□□ 0.76
PTP4A1Q93096 AL451085.2-201ENST00000605085 799 ntBASIC19.8■□□□□ 0.76
PTP4A1Q93096 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
PTP4A1Q93096 FP325331.1-202ENST00000623531 1380 ntBASIC19.8■□□□□ 0.76
PTP4A1Q93096 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTP4A1Q93096 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.8■□□□□ 0.76
PTP4A1Q93096 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTP4A1Q93096 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTP4A1Q93096 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
PTP4A1Q93096 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.79■□□□□ 0.76
PTP4A1Q93096 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.79■□□□□ 0.76
PTP4A1Q93096 AC009299.2-201ENST00000482477 511 ntBASIC19.79■□□□□ 0.76
PTP4A1Q93096 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
PTP4A1Q93096 KRT125P-201ENST00000546827 989 ntBASIC19.79■□□□□ 0.76
PTP4A1Q93096 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.79■□□□□ 0.76
PTP4A1Q93096 MIR6722-201ENST00000617286 78 ntBASIC19.79■□□□□ 0.76
PTP4A1Q93096 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PTP4A1Q93096 AC021242.3-201ENST00000607598 1377 ntBASIC19.79■□□□□ 0.76
PTP4A1Q93096 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTP4A1Q93096 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTP4A1Q93096 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTP4A1Q93096 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.78■□□□□ 0.76
PTP4A1Q93096 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
PTP4A1Q93096 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTP4A1Q93096 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTP4A1Q93096 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.77■□□□□ 0.76
PTP4A1Q93096 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
PTP4A1Q93096 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTP4A1Q93096 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTP4A1Q93096 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
PTP4A1Q93096 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTP4A1Q93096 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.77■□□□□ 0.76
PTP4A1Q93096 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.77■□□□□ 0.76
PTP4A1Q93096 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.77■□□□□ 0.76
PTP4A1Q93096 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.77■□□□□ 0.76
PTP4A1Q93096 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTP4A1Q93096 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTP4A1Q93096 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.77■□□□□ 0.75
PTP4A1Q93096 AC005703.6-201ENST00000623265 1329 ntBASIC19.76■□□□□ 0.75
PTP4A1Q93096 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
PTP4A1Q93096 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
PTP4A1Q93096 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.76■□□□□ 0.75
PTP4A1Q93096 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTP4A1Q93096 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTP4A1Q93096 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.76■□□□□ 0.75
PTP4A1Q93096 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.76■□□□□ 0.75
PTP4A1Q93096 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.76■□□□□ 0.75
PTP4A1Q93096 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC19.76■□□□□ 0.75
PTP4A1Q93096 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.76■□□□□ 0.75
PTP4A1Q93096 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
PTP4A1Q93096 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTP4A1Q93096 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTP4A1Q93096 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTP4A1Q93096 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTP4A1Q93096 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
PTP4A1Q93096 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.75■□□□□ 0.75
PTP4A1Q93096 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
PTP4A1Q93096 AC239859.2-201ENST00000444165 318 ntBASIC19.75■□□□□ 0.75
PTP4A1Q93096 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTP4A1Q93096 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.75■□□□□ 0.75
PTP4A1Q93096 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTP4A1Q93096 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.75■□□□□ 0.75
PTP4A1Q93096 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTP4A1Q93096 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTP4A1Q93096 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTP4A1Q93096 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTP4A1Q93096 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
PTP4A1Q93096 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTP4A1Q93096 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.74■□□□□ 0.75
PTP4A1Q93096 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTP4A1Q93096 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTP4A1Q93096 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTP4A1Q93096 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms