Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
USP48Q86UV5 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC27.05■■□□□ 1.92
USP48Q86UV5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
USP48Q86UV5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC27.05■■□□□ 1.92
USP48Q86UV5 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
USP48Q86UV5 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
USP48Q86UV5 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
USP48Q86UV5 MIR6089-201ENST00000616698 64 ntBASIC27.04■■□□□ 1.92
USP48Q86UV5 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC27.04■■□□□ 1.92
USP48Q86UV5 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
USP48Q86UV5 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
USP48Q86UV5 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
USP48Q86UV5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
USP48Q86UV5 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
USP48Q86UV5 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC27.03■■□□□ 1.92
USP48Q86UV5 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
USP48Q86UV5 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USP48Q86UV5 DUSP8P5-201ENST00000422884 1815 ntBASIC27.02■■□□□ 1.92
USP48Q86UV5 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC27.02■■□□□ 1.92
USP48Q86UV5 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
USP48Q86UV5 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USP48Q86UV5 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
USP48Q86UV5 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC27.02■■□□□ 1.92
USP48Q86UV5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC27.02■■□□□ 1.92
USP48Q86UV5 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC27.02■■□□□ 1.92
USP48Q86UV5 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
USP48Q86UV5 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC27.02■■□□□ 1.92
USP48Q86UV5 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
USP48Q86UV5 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.92
USP48Q86UV5 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC27.01■■□□□ 1.92
USP48Q86UV5 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
USP48Q86UV5 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC27.01■■□□□ 1.92
USP48Q86UV5 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC27.01■■□□□ 1.91
USP48Q86UV5 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC27.01■■□□□ 1.91
USP48Q86UV5 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
USP48Q86UV5 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
USP48Q86UV5 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC27.01■■□□□ 1.91
USP48Q86UV5 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
USP48Q86UV5 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
USP48Q86UV5 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC27.01■■□□□ 1.91
USP48Q86UV5 TK2-208ENST00000545043 1120 ntTSL 2 BASIC27.01■■□□□ 1.91
USP48Q86UV5 TERF1P2-201ENST00000583350 1212 ntBASIC27.01■■□□□ 1.91
USP48Q86UV5 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC27.01■■□□□ 1.91
USP48Q86UV5 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
USP48Q86UV5 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
USP48Q86UV5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC27■■□□□ 1.91
USP48Q86UV5 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
USP48Q86UV5 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC27■■□□□ 1.91
USP48Q86UV5 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC27■■□□□ 1.91
USP48Q86UV5 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
USP48Q86UV5 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
USP48Q86UV5 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.99■■□□□ 1.91
USP48Q86UV5 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.99■■□□□ 1.91
USP48Q86UV5 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP48Q86UV5 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC26.99■■□□□ 1.91
USP48Q86UV5 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
USP48Q86UV5 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC26.99■■□□□ 1.91
USP48Q86UV5 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC26.99■■□□□ 1.91
USP48Q86UV5 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26.99■■□□□ 1.91
USP48Q86UV5 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
USP48Q86UV5 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP48Q86UV5 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP48Q86UV5 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP48Q86UV5 LINC02228-203ENST00000641970 1355 ntBASIC26.98■■□□□ 1.91
USP48Q86UV5 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP48Q86UV5 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC26.98■■□□□ 1.91
USP48Q86UV5 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
USP48Q86UV5 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USP48Q86UV5 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC26.97■■□□□ 1.91
USP48Q86UV5 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USP48Q86UV5 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC26.97■■□□□ 1.91
USP48Q86UV5 AC080038.1-201ENST00000611274 1154 ntBASIC26.97■■□□□ 1.91
USP48Q86UV5 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USP48Q86UV5 ME2-208ENST00000638937 2471 ntTSL 5 BASIC26.97■■□□□ 1.91
USP48Q86UV5 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC26.97■■□□□ 1.91
USP48Q86UV5 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP48Q86UV5 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
USP48Q86UV5 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
USP48Q86UV5 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP48Q86UV5 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
USP48Q86UV5 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
USP48Q86UV5 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
USP48Q86UV5 USF2-207ENST00000595068 1612 ntTSL 5 BASIC26.96■■□□□ 1.91
USP48Q86UV5 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC26.96■■□□□ 1.91
USP48Q86UV5 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP48Q86UV5 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP48Q86UV5 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
USP48Q86UV5 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC26.95■■□□□ 1.91
USP48Q86UV5 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
USP48Q86UV5 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC26.95■■□□□ 1.9
USP48Q86UV5 GXYLT1P5-201ENST00000614548 1189 ntBASIC26.95■■□□□ 1.9
USP48Q86UV5 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC26.95■■□□□ 1.9
USP48Q86UV5 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC26.95■■□□□ 1.9
USP48Q86UV5 HLA-L-211ENST00000482052 1765 ntBASIC26.94■■□□□ 1.9
USP48Q86UV5 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC26.94■■□□□ 1.9
USP48Q86UV5 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USP48Q86UV5 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USP48Q86UV5 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USP48Q86UV5 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC26.94■■□□□ 1.9
USP48Q86UV5 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms