Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
KRT40Q6A162 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC25.57■■□□□ 1.68
KRT40Q6A162 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
KRT40Q6A162 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
KRT40Q6A162 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
KRT40Q6A162 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC25.56■■□□□ 1.68
KRT40Q6A162 AC009086.3-201ENST00000623486 1008 ntBASIC25.56■■□□□ 1.68
KRT40Q6A162 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
KRT40Q6A162 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
KRT40Q6A162 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
KRT40Q6A162 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
KRT40Q6A162 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
KRT40Q6A162 AC135279.3-201ENST00000610945 1311 ntBASIC25.56■■□□□ 1.68
KRT40Q6A162 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
KRT40Q6A162 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
KRT40Q6A162 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
KRT40Q6A162 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
KRT40Q6A162 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.55■■□□□ 1.68
KRT40Q6A162 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC25.55■■□□□ 1.68
KRT40Q6A162 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.55■■□□□ 1.68
KRT40Q6A162 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
KRT40Q6A162 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.55■■□□□ 1.68
KRT40Q6A162 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.55■■□□□ 1.68
KRT40Q6A162 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
KRT40Q6A162 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
KRT40Q6A162 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
KRT40Q6A162 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
KRT40Q6A162 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
KRT40Q6A162 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
KRT40Q6A162 AC106739.1-201ENST00000617035 715 ntBASIC25.54■■□□□ 1.68
KRT40Q6A162 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC25.54■■□□□ 1.68
KRT40Q6A162 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
KRT40Q6A162 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.54■■□□□ 1.68
KRT40Q6A162 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
KRT40Q6A162 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
KRT40Q6A162 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
KRT40Q6A162 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC25.53■■□□□ 1.68
KRT40Q6A162 AL117328.2-201ENST00000624617 1940 ntBASIC25.53■■□□□ 1.68
KRT40Q6A162 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
KRT40Q6A162 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC25.53■■□□□ 1.68
KRT40Q6A162 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC25.53■■□□□ 1.68
KRT40Q6A162 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
KRT40Q6A162 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
KRT40Q6A162 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.53■■□□□ 1.68
KRT40Q6A162 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
KRT40Q6A162 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
KRT40Q6A162 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
KRT40Q6A162 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
KRT40Q6A162 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC25.53■■□□□ 1.68
KRT40Q6A162 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.53■■□□□ 1.68
KRT40Q6A162 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
KRT40Q6A162 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
KRT40Q6A162 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC25.52■■□□□ 1.68
KRT40Q6A162 LGR4-203ENST00000480977 492 ntTSL 2 BASIC25.52■■□□□ 1.68
KRT40Q6A162 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
KRT40Q6A162 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
KRT40Q6A162 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
KRT40Q6A162 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.52■■□□□ 1.68
KRT40Q6A162 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
KRT40Q6A162 AC006455.2-201ENST00000429931 906 ntBASIC25.51■■□□□ 1.67
KRT40Q6A162 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
KRT40Q6A162 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC25.51■■□□□ 1.67
KRT40Q6A162 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
KRT40Q6A162 ESRRAP2-201ENST00000418437 1549 ntBASIC25.51■■□□□ 1.67
KRT40Q6A162 AC004687.1-201ENST00000579003 1625 ntBASIC25.51■■□□□ 1.67
KRT40Q6A162 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
KRT40Q6A162 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
KRT40Q6A162 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
KRT40Q6A162 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
KRT40Q6A162 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
KRT40Q6A162 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.5■■□□□ 1.67
KRT40Q6A162 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
KRT40Q6A162 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC25.5■■□□□ 1.67
KRT40Q6A162 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.5■■□□□ 1.67
KRT40Q6A162 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC25.5■■□□□ 1.67
KRT40Q6A162 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC25.5■■□□□ 1.67
KRT40Q6A162 AL499627.2-201ENST00000606283 725 ntBASIC25.5■■□□□ 1.67
KRT40Q6A162 AC241377.3-202ENST00000626088 1088 ntBASIC25.5■■□□□ 1.67
KRT40Q6A162 AC241585.3-202ENST00000628937 1088 ntBASIC25.5■■□□□ 1.67
KRT40Q6A162 AC245100.8-202ENST00000629247 1058 ntBASIC25.5■■□□□ 1.67
KRT40Q6A162 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
KRT40Q6A162 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC25.49■■□□□ 1.67
KRT40Q6A162 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
KRT40Q6A162 GUSBP5-202ENST00000510805 1989 ntBASIC25.49■■□□□ 1.67
KRT40Q6A162 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
KRT40Q6A162 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
KRT40Q6A162 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
KRT40Q6A162 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.49■■□□□ 1.67
KRT40Q6A162 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
KRT40Q6A162 AC099791.2-201ENST00000605725 427 ntBASIC25.49■■□□□ 1.67
KRT40Q6A162 MIR5787-201ENST00000611784 55 ntBASIC25.49■■□□□ 1.67
KRT40Q6A162 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
KRT40Q6A162 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
KRT40Q6A162 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
KRT40Q6A162 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
KRT40Q6A162 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
KRT40Q6A162 AC087742.1-201ENST00000575880 1738 ntBASIC25.49■■□□□ 1.67
KRT40Q6A162 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC25.48■■□□□ 1.67
KRT40Q6A162 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
KRT40Q6A162 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms