Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.97■□□□□ 0.63
USF3Q68DE3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USF3Q68DE3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.97■□□□□ 0.63
USF3Q68DE3 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USF3Q68DE3 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USF3Q68DE3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USF3Q68DE3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USF3Q68DE3 CCDC92B-201ENST00000575506 885 ntBASIC18.96■□□□□ 0.63
USF3Q68DE3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USF3Q68DE3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USF3Q68DE3 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC18.96■□□□□ 0.63
USF3Q68DE3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.96■□□□□ 0.63
USF3Q68DE3 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USF3Q68DE3 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USF3Q68DE3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.96■□□□□ 0.63
USF3Q68DE3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.96■□□□□ 0.63
USF3Q68DE3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.96■□□□□ 0.63
USF3Q68DE3 MIR6084-201ENST00000622012 110 ntBASIC18.96■□□□□ 0.63
USF3Q68DE3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.95■□□□□ 0.62
USF3Q68DE3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USF3Q68DE3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USF3Q68DE3 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
USF3Q68DE3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
USF3Q68DE3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USF3Q68DE3 KRT18P14-201ENST00000534205 1250 ntBASIC18.95■□□□□ 0.62
USF3Q68DE3 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USF3Q68DE3 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USF3Q68DE3 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USF3Q68DE3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USF3Q68DE3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF3Q68DE3 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
USF3Q68DE3 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC18.94■□□□□ 0.62
USF3Q68DE3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
USF3Q68DE3 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF3Q68DE3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF3Q68DE3 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
USF3Q68DE3 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF3Q68DE3 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF3Q68DE3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF3Q68DE3 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.94■□□□□ 0.62
USF3Q68DE3 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF3Q68DE3 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
USF3Q68DE3 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.94■□□□□ 0.62
USF3Q68DE3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.93■□□□□ 0.62
USF3Q68DE3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.93■□□□□ 0.62
USF3Q68DE3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.93■□□□□ 0.62
USF3Q68DE3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.93■□□□□ 0.62
USF3Q68DE3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.93■□□□□ 0.62
USF3Q68DE3 C9orf163-202ENST00000624034 2573 ntBASIC18.93■□□□□ 0.62
USF3Q68DE3 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USF3Q68DE3 TERF1P2-201ENST00000583350 1212 ntBASIC18.93■□□□□ 0.62
USF3Q68DE3 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.92■□□□□ 0.62
USF3Q68DE3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.92■□□□□ 0.62
USF3Q68DE3 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.92■□□□□ 0.62
USF3Q68DE3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF3Q68DE3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF3Q68DE3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USF3Q68DE3 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
USF3Q68DE3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF3Q68DE3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF3Q68DE3 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF3Q68DE3 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
USF3Q68DE3 ID1-201ENST00000376105 1233 ntBASIC18.92■□□□□ 0.62
USF3Q68DE3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.92■□□□□ 0.62
USF3Q68DE3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USF3Q68DE3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.91■□□□□ 0.62
USF3Q68DE3 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
USF3Q68DE3 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.91■□□□□ 0.62
USF3Q68DE3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USF3Q68DE3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USF3Q68DE3 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.91■□□□□ 0.62
USF3Q68DE3 AL137784.2-201ENST00000607332 1000 ntBASIC18.91■□□□□ 0.62
USF3Q68DE3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USF3Q68DE3 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USF3Q68DE3 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USF3Q68DE3 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.9■□□□□ 0.62
USF3Q68DE3 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.9■□□□□ 0.62
USF3Q68DE3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF3Q68DE3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF3Q68DE3 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF3Q68DE3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF3Q68DE3 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF3Q68DE3 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF3Q68DE3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.9■□□□□ 0.62
USF3Q68DE3 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.9■□□□□ 0.62
USF3Q68DE3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF3Q68DE3 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.9■□□□□ 0.62
USF3Q68DE3 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
USF3Q68DE3 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
USF3Q68DE3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USF3Q68DE3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
USF3Q68DE3 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF3Q68DE3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
USF3Q68DE3 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
USF3Q68DE3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.62
USF3Q68DE3 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.89■□□□□ 0.61
USF3Q68DE3 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.89■□□□□ 0.61
USF3Q68DE3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms