Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 AL109923.1-201ENST00000618799 583 ntBASIC28.23■■■□□ 2.11
RC3H1Q5TC82 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC28.22■■■□□ 2.11
RC3H1Q5TC82 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RC3H1Q5TC82 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RC3H1Q5TC82 AC006970.2-201ENST00000450065 779 ntBASIC28.22■■■□□ 2.11
RC3H1Q5TC82 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC28.22■■■□□ 2.11
RC3H1Q5TC82 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
RC3H1Q5TC82 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RC3H1Q5TC82 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RC3H1Q5TC82 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RC3H1Q5TC82 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RC3H1Q5TC82 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RC3H1Q5TC82 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RC3H1Q5TC82 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RC3H1Q5TC82 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC28.21■■■□□ 2.11
RC3H1Q5TC82 SMUG1P1-201ENST00000590640 811 ntBASIC28.21■■■□□ 2.11
RC3H1Q5TC82 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
RC3H1Q5TC82 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
RC3H1Q5TC82 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
RC3H1Q5TC82 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC28.2■■■□□ 2.11
RC3H1Q5TC82 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RC3H1Q5TC82 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
RC3H1Q5TC82 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
RC3H1Q5TC82 KRT18P11-201ENST00000435214 1283 ntBASIC28.2■■■□□ 2.1
RC3H1Q5TC82 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RC3H1Q5TC82 CPT2-209ENST00000636935 803 ntTSL 5 BASIC28.2■■■□□ 2.1
RC3H1Q5TC82 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC28.2■■■□□ 2.1
RC3H1Q5TC82 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC28.2■■■□□ 2.1
RC3H1Q5TC82 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RC3H1Q5TC82 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
RC3H1Q5TC82 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RC3H1Q5TC82 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RC3H1Q5TC82 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RC3H1Q5TC82 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RC3H1Q5TC82 AC011767.1-201ENST00000617410 1153 ntBASIC28.18■■■□□ 2.1
RC3H1Q5TC82 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RC3H1Q5TC82 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC28.18■■■□□ 2.1
RC3H1Q5TC82 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RC3H1Q5TC82 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC28.17■■■□□ 2.1
RC3H1Q5TC82 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RC3H1Q5TC82 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
RC3H1Q5TC82 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC28.17■■■□□ 2.1
RC3H1Q5TC82 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC28.17■■■□□ 2.1
RC3H1Q5TC82 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC28.17■■■□□ 2.1
RC3H1Q5TC82 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
RC3H1Q5TC82 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC28.17■■■□□ 2.1
RC3H1Q5TC82 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 AL355802.2-201ENST00000402069 882 ntBASIC28.16■■■□□ 2.1
RC3H1Q5TC82 TESC-206ENST00000541210 936 ntTSL 3 BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 EI24-211ENST00000534546 1544 ntTSL 2 BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
RC3H1Q5TC82 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RC3H1Q5TC82 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
RC3H1Q5TC82 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
RC3H1Q5TC82 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
RC3H1Q5TC82 AC010141.3-201ENST00000456659 717 ntBASIC28.15■■■□□ 2.1
RC3H1Q5TC82 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC28.15■■■□□ 2.1
RC3H1Q5TC82 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
RC3H1Q5TC82 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC28.14■■■□□ 2.1
RC3H1Q5TC82 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC28.14■■■□□ 2.1
RC3H1Q5TC82 SPI1-203ENST00000533030 661 ntTSL 2 BASIC28.14■■■□□ 2.1
RC3H1Q5TC82 MDK-213ENST00000617138 635 ntTSL 2 BASIC28.14■■■□□ 2.1
RC3H1Q5TC82 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
RC3H1Q5TC82 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC28.14■■■□□ 2.09
RC3H1Q5TC82 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
RC3H1Q5TC82 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.09
RC3H1Q5TC82 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
RC3H1Q5TC82 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.09
RC3H1Q5TC82 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC28.13■■■□□ 2.09
RC3H1Q5TC82 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
RC3H1Q5TC82 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC28.13■■■□□ 2.09
RC3H1Q5TC82 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
RC3H1Q5TC82 ESRRAP2-201ENST00000418437 1549 ntBASIC28.13■■■□□ 2.09
RC3H1Q5TC82 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms