Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RFX4Q33E94 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.48■□□□□ 0.87
RFX4Q33E94 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.48■□□□□ 0.87
RFX4Q33E94 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX4Q33E94 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.48■□□□□ 0.87
RFX4Q33E94 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.48■□□□□ 0.87
RFX4Q33E94 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX4Q33E94 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX4Q33E94 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX4Q33E94 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFX4Q33E94 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RFX4Q33E94 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RFX4Q33E94 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.47■□□□□ 0.87
RFX4Q33E94 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.47■□□□□ 0.87
RFX4Q33E94 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFX4Q33E94 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
RFX4Q33E94 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFX4Q33E94 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFX4Q33E94 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.47■□□□□ 0.87
RFX4Q33E94 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.47■□□□□ 0.87
RFX4Q33E94 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX4Q33E94 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RFX4Q33E94 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
RFX4Q33E94 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RFX4Q33E94 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
RFX4Q33E94 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RFX4Q33E94 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX4Q33E94 AC120024.1-201ENST00000562672 995 ntBASIC20.46■□□□□ 0.87
RFX4Q33E94 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.46■□□□□ 0.87
RFX4Q33E94 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RFX4Q33E94 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX4Q33E94 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.46■□□□□ 0.87
RFX4Q33E94 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
RFX4Q33E94 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RFX4Q33E94 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX4Q33E94 AC026310.3-201ENST00000625186 2373 ntBASIC20.45■□□□□ 0.86
RFX4Q33E94 AL353803.4-201ENST00000565882 1934 ntBASIC20.45■□□□□ 0.86
RFX4Q33E94 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX4Q33E94 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.45■□□□□ 0.86
RFX4Q33E94 BHLHE23-202ENST00000612929 1109 ntBASIC20.45■□□□□ 0.86
RFX4Q33E94 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX4Q33E94 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RFX4Q33E94 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RFX4Q33E94 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX4Q33E94 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX4Q33E94 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFX4Q33E94 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFX4Q33E94 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX4Q33E94 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX4Q33E94 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX4Q33E94 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.44■□□□□ 0.86
RFX4Q33E94 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.44■□□□□ 0.86
RFX4Q33E94 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.44■□□□□ 0.86
RFX4Q33E94 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.44■□□□□ 0.86
RFX4Q33E94 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX4Q33E94 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX4Q33E94 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX4Q33E94 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.43■□□□□ 0.86
RFX4Q33E94 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFX4Q33E94 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.43■□□□□ 0.86
RFX4Q33E94 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFX4Q33E94 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.43■□□□□ 0.86
RFX4Q33E94 AC074183.2-201ENST00000623112 922 ntBASIC20.43■□□□□ 0.86
RFX4Q33E94 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
RFX4Q33E94 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFX4Q33E94 SLC25A24-204ENST00000569674 2357 ntBASIC20.43■□□□□ 0.86
RFX4Q33E94 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFX4Q33E94 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX4Q33E94 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX4Q33E94 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFX4Q33E94 AC087742.1-201ENST00000575880 1738 ntBASIC20.42■□□□□ 0.86
RFX4Q33E94 KRT18P24-201ENST00000344739 1156 ntBASIC20.42■□□□□ 0.86
RFX4Q33E94 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFX4Q33E94 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFX4Q33E94 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFX4Q33E94 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFX4Q33E94 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX4Q33E94 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
RFX4Q33E94 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX4Q33E94 AC004987.1-201ENST00000428627 508 ntBASIC20.41■□□□□ 0.86
RFX4Q33E94 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RFX4Q33E94 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX4Q33E94 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX4Q33E94 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX4Q33E94 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX4Q33E94 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX4Q33E94 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX4Q33E94 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX4Q33E94 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RFX4Q33E94 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX4Q33E94 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX4Q33E94 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX4Q33E94 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX4Q33E94 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX4Q33E94 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
RFX4Q33E94 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX4Q33E94 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX4Q33E94 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.4■□□□□ 0.86
RFX4Q33E94 ATP5G2P3-201ENST00000429083 425 ntBASIC20.4■□□□□ 0.86
RFX4Q33E94 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms