Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC007322.1-201ENST00000426983 750 ntBASIC16.29■□□□□ 0.2
PRKDCP78527 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.29■□□□□ 0.2
PRKDCP78527 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PRKDCP78527 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PRKDCP78527 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PRKDCP78527 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC16.28■□□□□ 0.2
PRKDCP78527 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PRKDCP78527 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC16.28■□□□□ 0.2
PRKDCP78527 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
PRKDCP78527 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.28■□□□□ 0.2
PRKDCP78527 CD37-213ENST00000598095 1598 ntTSL 2 BASIC16.27■□□□□ 0.2
PRKDCP78527 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PRKDCP78527 MMD2-204ENST00000612910 778 ntTSL 5 BASIC16.27■□□□□ 0.2
PRKDCP78527 AC073912.3-201ENST00000624414 853 ntBASIC16.27■□□□□ 0.2
PRKDCP78527 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PRKDCP78527 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PRKDCP78527 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PRKDCP78527 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PRKDCP78527 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC16.27■□□□□ 0.19
PRKDCP78527 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC16.27■□□□□ 0.19
PRKDCP78527 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
PRKDCP78527 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.27■□□□□ 0.19
PRKDCP78527 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PRKDCP78527 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
PRKDCP78527 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.26■□□□□ 0.19
PRKDCP78527 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.26■□□□□ 0.19
PRKDCP78527 AL445228.2-201ENST00000605589 952 ntBASIC16.26■□□□□ 0.19
PRKDCP78527 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKDCP78527 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC16.26■□□□□ 0.19
PRKDCP78527 MIR4497-201ENST00000583208 89 ntBASIC16.26■□□□□ 0.19
PRKDCP78527 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC16.26■□□□□ 0.19
PRKDCP78527 MYC-209ENST00000641252 345 ntBASIC16.26■□□□□ 0.19
PRKDCP78527 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PRKDCP78527 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKDCP78527 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC16.26■□□□□ 0.19
PRKDCP78527 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKDCP78527 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
PRKDCP78527 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC16.26■□□□□ 0.19
PRKDCP78527 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PRKDCP78527 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC16.25■□□□□ 0.19
PRKDCP78527 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PRKDCP78527 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.25■□□□□ 0.19
PRKDCP78527 AL158047.1-201ENST00000445918 881 ntBASIC16.25■□□□□ 0.19
PRKDCP78527 TESC-206ENST00000541210 936 ntTSL 3 BASIC16.25■□□□□ 0.19
PRKDCP78527 CPT2-209ENST00000636935 803 ntTSL 5 BASIC16.25■□□□□ 0.19
PRKDCP78527 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKDCP78527 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PRKDCP78527 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKDCP78527 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.25■□□□□ 0.19
PRKDCP78527 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PRKDCP78527 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKDCP78527 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.24■□□□□ 0.19
PRKDCP78527 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC16.24■□□□□ 0.19
PRKDCP78527 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.24■□□□□ 0.19
PRKDCP78527 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PRKDCP78527 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKDCP78527 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKDCP78527 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
PRKDCP78527 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PRKDCP78527 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
PRKDCP78527 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKDCP78527 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PRKDCP78527 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKDCP78527 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PRKDCP78527 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PRKDCP78527 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC16.24■□□□□ 0.19
PRKDCP78527 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.24■□□□□ 0.19
PRKDCP78527 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PRKDCP78527 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PRKDCP78527 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKDCP78527 RPS2P4-201ENST00000476944 856 ntBASIC16.23■□□□□ 0.19
PRKDCP78527 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKDCP78527 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKDCP78527 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKDCP78527 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKDCP78527 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PRKDCP78527 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
PRKDCP78527 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
PRKDCP78527 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PRKDCP78527 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKDCP78527 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC16.23■□□□□ 0.19
PRKDCP78527 KRT87P-202ENST00000534226 1464 ntBASIC16.23■□□□□ 0.19
PRKDCP78527 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PRKDCP78527 AC073648.6-201ENST00000641589 218 ntBASIC16.22■□□□□ 0.19
PRKDCP78527 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PRKDCP78527 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PRKDCP78527 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.22■□□□□ 0.19
PRKDCP78527 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC16.22■□□□□ 0.19
PRKDCP78527 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
PRKDCP78527 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKDCP78527 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
PRKDCP78527 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.22■□□□□ 0.19
PRKDCP78527 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.22■□□□□ 0.19
PRKDCP78527 AC133552.2-202ENST00000575694 574 ntBASIC16.22■□□□□ 0.19
PRKDCP78527 AC006058.3-201ENST00000606217 1069 ntBASIC16.22■□□□□ 0.19
PRKDCP78527 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PRKDCP78527 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PRKDCP78527 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.21■□□□□ 0.19
PRKDCP78527 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC16.21■□□□□ 0.19
PRKDCP78527 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms