Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
RAE1P78406 MIR3621-201ENST00000580529 85 ntBASIC21■□□□□ 0.95
RAE1P78406 AL499627.2-201ENST00000606283 725 ntBASIC21■□□□□ 0.95
RAE1P78406 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RAE1P78406 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
RAE1P78406 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RAE1P78406 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21■□□□□ 0.95
RAE1P78406 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.99■□□□□ 0.95
RAE1P78406 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RAE1P78406 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
RAE1P78406 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.99■□□□□ 0.95
RAE1P78406 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
RAE1P78406 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.99■□□□□ 0.95
RAE1P78406 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAE1P78406 LINC01960-201ENST00000563759 1884 ntBASIC20.98■□□□□ 0.95
RAE1P78406 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAE1P78406 LINC00565-201ENST00000562710 2331 ntBASIC20.98■□□□□ 0.95
RAE1P78406 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAE1P78406 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RAE1P78406 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RAE1P78406 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAE1P78406 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.98■□□□□ 0.95
RAE1P78406 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.98■□□□□ 0.95
RAE1P78406 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
RAE1P78406 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
RAE1P78406 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.98■□□□□ 0.95
RAE1P78406 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAE1P78406 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAE1P78406 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAE1P78406 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAE1P78406 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
RAE1P78406 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.97■□□□□ 0.95
RAE1P78406 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAE1P78406 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAE1P78406 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAE1P78406 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RAE1P78406 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAE1P78406 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RAE1P78406 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.97■□□□□ 0.95
RAE1P78406 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.97■□□□□ 0.95
RAE1P78406 AL356740.2-201ENST00000601559 647 ntBASIC20.97■□□□□ 0.95
RAE1P78406 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RAE1P78406 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAE1P78406 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAE1P78406 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
RAE1P78406 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.96■□□□□ 0.95
RAE1P78406 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RAE1P78406 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
RAE1P78406 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.96■□□□□ 0.95
RAE1P78406 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
RAE1P78406 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RAE1P78406 AC006455.2-201ENST00000429931 906 ntBASIC20.96■□□□□ 0.95
RAE1P78406 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.96■□□□□ 0.95
RAE1P78406 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAE1P78406 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAE1P78406 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RAE1P78406 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAE1P78406 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.96■□□□□ 0.95
RAE1P78406 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.96■□□□□ 0.95
RAE1P78406 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAE1P78406 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.95■□□□□ 0.95
RAE1P78406 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
RAE1P78406 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RAE1P78406 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
RAE1P78406 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RAE1P78406 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RAE1P78406 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
RAE1P78406 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
RAE1P78406 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RAE1P78406 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.95■□□□□ 0.94
RAE1P78406 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.95■□□□□ 0.94
RAE1P78406 AC241377.3-202ENST00000626088 1088 ntBASIC20.95■□□□□ 0.94
RAE1P78406 AC241585.3-202ENST00000628937 1088 ntBASIC20.95■□□□□ 0.94
RAE1P78406 AC245100.8-202ENST00000629247 1058 ntBASIC20.95■□□□□ 0.94
RAE1P78406 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RAE1P78406 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
RAE1P78406 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RAE1P78406 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
RAE1P78406 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.95■□□□□ 0.94
RAE1P78406 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RAE1P78406 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.95■□□□□ 0.94
RAE1P78406 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
RAE1P78406 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.94■□□□□ 0.94
RAE1P78406 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RAE1P78406 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms