Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN1P58418 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.66■□□□□ 0.74
CLRN1P58418 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CLRN1P58418 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN1P58418 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN1P58418 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CLRN1P58418 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN1P58418 SRD5A1P1-201ENST00000442297 786 ntBASIC19.65■□□□□ 0.74
CLRN1P58418 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.65■□□□□ 0.74
CLRN1P58418 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CLRN1P58418 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.65■□□□□ 0.74
CLRN1P58418 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN1P58418 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.65■□□□□ 0.74
CLRN1P58418 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN1P58418 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN1P58418 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.65■□□□□ 0.74
CLRN1P58418 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN1P58418 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
CLRN1P58418 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLRN1P58418 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.64■□□□□ 0.73
CLRN1P58418 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.64■□□□□ 0.73
CLRN1P58418 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.64■□□□□ 0.73
CLRN1P58418 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 ESRRAP2-201ENST00000418437 1549 ntBASIC19.64■□□□□ 0.73
CLRN1P58418 AC004687.1-201ENST00000579003 1625 ntBASIC19.64■□□□□ 0.73
CLRN1P58418 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CLRN1P58418 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN1P58418 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CLRN1P58418 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.64■□□□□ 0.73
CLRN1P58418 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CLRN1P58418 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.63■□□□□ 0.73
CLRN1P58418 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.63■□□□□ 0.73
CLRN1P58418 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.63■□□□□ 0.73
CLRN1P58418 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.63■□□□□ 0.73
CLRN1P58418 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.63■□□□□ 0.73
CLRN1P58418 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.63■□□□□ 0.73
CLRN1P58418 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.63■□□□□ 0.73
CLRN1P58418 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.63■□□□□ 0.73
CLRN1P58418 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN1P58418 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.63■□□□□ 0.73
CLRN1P58418 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.63■□□□□ 0.73
CLRN1P58418 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLRN1P58418 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CLRN1P58418 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLRN1P58418 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.62■□□□□ 0.73
CLRN1P58418 AC099791.2-201ENST00000605725 427 ntBASIC19.62■□□□□ 0.73
CLRN1P58418 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.62■□□□□ 0.73
CLRN1P58418 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLRN1P58418 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLRN1P58418 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLRN1P58418 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLRN1P58418 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.62■□□□□ 0.73
CLRN1P58418 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.61■□□□□ 0.73
CLRN1P58418 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.61■□□□□ 0.73
CLRN1P58418 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLRN1P58418 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLRN1P58418 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLRN1P58418 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.61■□□□□ 0.73
CLRN1P58418 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.61■□□□□ 0.73
CLRN1P58418 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.61■□□□□ 0.73
CLRN1P58418 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.61■□□□□ 0.73
CLRN1P58418 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.61■□□□□ 0.73
CLRN1P58418 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLRN1P58418 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLRN1P58418 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLRN1P58418 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLRN1P58418 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLRN1P58418 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CLRN1P58418 AL117328.2-201ENST00000624617 1940 ntBASIC19.61■□□□□ 0.73
CLRN1P58418 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
CLRN1P58418 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CLRN1P58418 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN1P58418 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CLRN1P58418 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN1P58418 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.6■□□□□ 0.73
CLRN1P58418 AL512631.2-201ENST00000604634 923 ntBASIC19.6■□□□□ 0.73
CLRN1P58418 AC092171.4-201ENST00000609130 632 ntBASIC19.6■□□□□ 0.73
CLRN1P58418 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.6■□□□□ 0.73
CLRN1P58418 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN1P58418 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms