Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CX3CR1P49238 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CX3CR1P49238 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CX3CR1P49238 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CX3CR1P49238 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CX3CR1P49238 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.32■□□□□ 0.68
CX3CR1P49238 PKD1P6-201ENST00000343738 4769 ntBASIC19.32■□□□□ 0.68
CX3CR1P49238 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CX3CR1P49238 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CR1P49238 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CX3CR1P49238 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CR1P49238 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CR1P49238 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.32■□□□□ 0.68
CX3CR1P49238 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CR1P49238 ECEL1P1-201ENST00000373592 1742 ntBASIC19.32■□□□□ 0.68
CX3CR1P49238 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.32■□□□□ 0.68
CX3CR1P49238 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.32■□□□□ 0.68
CX3CR1P49238 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.32■□□□□ 0.68
CX3CR1P49238 UNC93B8-201ENST00000511903 705 ntBASIC19.32■□□□□ 0.68
CX3CR1P49238 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CR1P49238 DUX4L4-201ENST00000566884 1269 ntBASIC19.32■□□□□ 0.68
CX3CR1P49238 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CR1P49238 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CR1P49238 AC127496.7-201ENST00000625110 1798 ntBASIC19.32■□□□□ 0.68
CX3CR1P49238 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CR1P49238 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CX3CR1P49238 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CR1P49238 LINC00526-201ENST00000581067 1875 ntBASIC19.31■□□□□ 0.68
CX3CR1P49238 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CR1P49238 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CX3CR1P49238 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CX3CR1P49238 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CX3CR1P49238 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CX3CR1P49238 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CR1P49238 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CR1P49238 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CR1P49238 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.31■□□□□ 0.68
CX3CR1P49238 AC009086.3-201ENST00000623486 1008 ntBASIC19.31■□□□□ 0.68
CX3CR1P49238 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CR1P49238 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CR1P49238 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CX3CR1P49238 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.3■□□□□ 0.68
CX3CR1P49238 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CX3CR1P49238 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.3■□□□□ 0.68
CX3CR1P49238 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CX3CR1P49238 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CX3CR1P49238 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.3■□□□□ 0.68
CX3CR1P49238 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CX3CR1P49238 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CX3CR1P49238 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.3■□□□□ 0.68
CX3CR1P49238 MIR6724-1-201ENST00000616420 92 ntBASIC19.3■□□□□ 0.68
CX3CR1P49238 MIR6724-2-201ENST00000616483 92 ntBASIC19.3■□□□□ 0.68
CX3CR1P49238 MIR6724-4-201ENST00000617390 92 ntBASIC19.3■□□□□ 0.68
CX3CR1P49238 MIR6724-3-201ENST00000622482 92 ntBASIC19.3■□□□□ 0.68
CX3CR1P49238 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CX3CR1P49238 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CX3CR1P49238 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CX3CR1P49238 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
CX3CR1P49238 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CX3CR1P49238 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CX3CR1P49238 AC242852.2-201ENST00000615738 1807 ntBASIC19.3■□□□□ 0.68
CX3CR1P49238 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.29■□□□□ 0.68
CX3CR1P49238 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CR1P49238 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CR1P49238 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CR1P49238 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CR1P49238 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CR1P49238 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CR1P49238 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.29■□□□□ 0.68
CX3CR1P49238 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.29■□□□□ 0.68
CX3CR1P49238 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.29■□□□□ 0.68
CX3CR1P49238 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.29■□□□□ 0.68
CX3CR1P49238 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CR1P49238 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CX3CR1P49238 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.29■□□□□ 0.68
CX3CR1P49238 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CR1P49238 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CR1P49238 LINC00565-201ENST00000562710 2331 ntBASIC19.29■□□□□ 0.68
CX3CR1P49238 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.29■□□□□ 0.68
CX3CR1P49238 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.29■□□□□ 0.68
CX3CR1P49238 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
CX3CR1P49238 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CR1P49238 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CR1P49238 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CR1P49238 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CR1P49238 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CR1P49238 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CX3CR1P49238 AL035685.1-201ENST00000636663 812 ntBASIC19.28■□□□□ 0.68
CX3CR1P49238 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CR1P49238 C17orf82-201ENST00000623772 1530 ntBASIC19.28■□□□□ 0.68
CX3CR1P49238 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CR1P49238 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CX3CR1P49238 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.28■□□□□ 0.68
CX3CR1P49238 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
CX3CR1P49238 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CX3CR1P49238 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CX3CR1P49238 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
CX3CR1P49238 KRT16P3-201ENST00000439127 1283 ntBASIC19.27■□□□□ 0.68
CX3CR1P49238 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.27■□□□□ 0.68
CX3CR1P49238 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms