Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
ABCD3P28288 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.35■□□□□ 0.85
ABCD3P28288 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ABCD3P28288 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ABCD3P28288 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.34■□□□□ 0.85
ABCD3P28288 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ABCD3P28288 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.34■□□□□ 0.85
ABCD3P28288 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.34■□□□□ 0.85
ABCD3P28288 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ABCD3P28288 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ABCD3P28288 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ABCD3P28288 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ABCD3P28288 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
ABCD3P28288 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ABCD3P28288 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
ABCD3P28288 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.34■□□□□ 0.85
ABCD3P28288 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.34■□□□□ 0.85
ABCD3P28288 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ABCD3P28288 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
ABCD3P28288 AC005837.3-201ENST00000612163 286 ntBASIC20.34■□□□□ 0.85
ABCD3P28288 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.34■□□□□ 0.85
ABCD3P28288 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ABCD3P28288 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ABCD3P28288 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
ABCD3P28288 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
ABCD3P28288 SLC47A1P1-202ENST00000449666 945 ntBASIC20.33■□□□□ 0.85
ABCD3P28288 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
ABCD3P28288 AP001330.3-201ENST00000520123 633 ntBASIC20.33■□□□□ 0.85
ABCD3P28288 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
ABCD3P28288 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.33■□□□□ 0.85
ABCD3P28288 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ABCD3P28288 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
ABCD3P28288 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.33■□□□□ 0.84
ABCD3P28288 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
ABCD3P28288 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
ABCD3P28288 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ABCD3P28288 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ABCD3P28288 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ABCD3P28288 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.33■□□□□ 0.84
ABCD3P28288 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
ABCD3P28288 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ABCD3P28288 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.32■□□□□ 0.84
ABCD3P28288 C9orf163-202ENST00000624034 2573 ntBASIC20.32■□□□□ 0.84
ABCD3P28288 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.32■□□□□ 0.84
ABCD3P28288 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCD3P28288 BX842568.3-201ENST00000418104 571 ntBASIC20.32■□□□□ 0.84
ABCD3P28288 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.32■□□□□ 0.84
ABCD3P28288 SUDS3P1-201ENST00000505831 966 ntBASIC20.32■□□□□ 0.84
ABCD3P28288 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCD3P28288 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ABCD3P28288 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
ABCD3P28288 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
ABCD3P28288 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.32■□□□□ 0.84
ABCD3P28288 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.32■□□□□ 0.84
ABCD3P28288 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCD3P28288 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.32■□□□□ 0.84
ABCD3P28288 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.31■□□□□ 0.84
ABCD3P28288 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.31■□□□□ 0.84
ABCD3P28288 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
ABCD3P28288 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
ABCD3P28288 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
ABCD3P28288 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.31■□□□□ 0.84
ABCD3P28288 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ABCD3P28288 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ABCD3P28288 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ABCD3P28288 AF213884.3-201ENST00000563833 479 ntBASIC20.31■□□□□ 0.84
ABCD3P28288 AC010525.1-201ENST00000585559 441 ntBASIC20.31■□□□□ 0.84
ABCD3P28288 AC233992.3-201ENST00000607491 485 ntBASIC20.31■□□□□ 0.84
ABCD3P28288 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ABCD3P28288 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.31■□□□□ 0.84
ABCD3P28288 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ABCD3P28288 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.31■□□□□ 0.84
ABCD3P28288 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
ABCD3P28288 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.31■□□□□ 0.84
ABCD3P28288 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
ABCD3P28288 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ABCD3P28288 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ABCD3P28288 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ABCD3P28288 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
ABCD3P28288 MIR939-201ENST00000401314 82 ntBASIC20.3■□□□□ 0.84
ABCD3P28288 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ABCD3P28288 AC027682.1-201ENST00000562846 899 ntBASIC20.3■□□□□ 0.84
ABCD3P28288 AC142381.2-201ENST00000566120 298 ntBASIC20.3■□□□□ 0.84
ABCD3P28288 AC008764.7-201ENST00000593779 1081 ntBASIC20.3■□□□□ 0.84
ABCD3P28288 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
ABCD3P28288 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
ABCD3P28288 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ABCD3P28288 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ABCD3P28288 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
ABCD3P28288 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
ABCD3P28288 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ABCD3P28288 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
ABCD3P28288 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ABCD3P28288 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
ABCD3P28288 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
ABCD3P28288 AL136967.2-201ENST00000623968 743 ntBASIC20.29■□□□□ 0.84
ABCD3P28288 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ABCD3P28288 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
ABCD3P28288 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.29■□□□□ 0.84
ABCD3P28288 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 139 ms