Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
COL5A1P20908 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.47■■□□□ 1.03
COL5A1P20908 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.47■■□□□ 1.03
COL5A1P20908 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.47■■□□□ 1.03
COL5A1P20908 AP004607.4-201ENST00000530158 1459 ntBASIC21.47■■□□□ 1.03
COL5A1P20908 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL5A1P20908 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL5A1P20908 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
COL5A1P20908 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL5A1P20908 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A1P20908 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.46■■□□□ 1.03
COL5A1P20908 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.46■■□□□ 1.03
COL5A1P20908 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A1P20908 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A1P20908 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A1P20908 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.46■■□□□ 1.03
COL5A1P20908 AC104771.1-201ENST00000603335 964 ntBASIC21.45■■□□□ 1.03
COL5A1P20908 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
COL5A1P20908 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
COL5A1P20908 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A1P20908 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A1P20908 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A1P20908 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
COL5A1P20908 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A1P20908 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A1P20908 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.45■■□□□ 1.02
COL5A1P20908 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A1P20908 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.45■■□□□ 1.02
COL5A1P20908 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.45■■□□□ 1.02
COL5A1P20908 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.45■■□□□ 1.02
COL5A1P20908 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.45■■□□□ 1.02
COL5A1P20908 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A1P20908 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL5A1P20908 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A1P20908 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A1P20908 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A1P20908 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
COL5A1P20908 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A1P20908 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A1P20908 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.44■■□□□ 1.02
COL5A1P20908 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.44■■□□□ 1.02
COL5A1P20908 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.44■■□□□ 1.02
COL5A1P20908 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.44■■□□□ 1.02
COL5A1P20908 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL5A1P20908 LINC01529-204ENST00000636474 1715 ntBASIC21.43■■□□□ 1.02
COL5A1P20908 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A1P20908 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A1P20908 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A1P20908 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A1P20908 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
COL5A1P20908 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.43■■□□□ 1.02
COL5A1P20908 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A1P20908 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.43■■□□□ 1.02
COL5A1P20908 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.43■■□□□ 1.02
COL5A1P20908 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.43■■□□□ 1.02
COL5A1P20908 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL5A1P20908 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.43■■□□□ 1.02
COL5A1P20908 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A1P20908 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A1P20908 LINC00543-201ENST00000567234 1845 ntBASIC21.42■■□□□ 1.02
COL5A1P20908 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A1P20908 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.42■■□□□ 1.02
COL5A1P20908 BID-214ENST00000617586 542 ntTSL 5 BASIC21.42■■□□□ 1.02
COL5A1P20908 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.42■■□□□ 1.02
COL5A1P20908 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL5A1P20908 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
COL5A1P20908 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
COL5A1P20908 AC004854.2-201ENST00000608450 1441 ntBASIC21.42■■□□□ 1.02
COL5A1P20908 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.41■■□□□ 1.02
COL5A1P20908 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A1P20908 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.41■■□□□ 1.02
COL5A1P20908 KRT19P1-201ENST00000405746 1186 ntBASIC21.41■■□□□ 1.02
COL5A1P20908 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.41■■□□□ 1.02
COL5A1P20908 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.41■■□□□ 1.02
COL5A1P20908 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.41■■□□□ 1.02
COL5A1P20908 AC068587.7-201ENST00000641602 218 ntBASIC21.41■■□□□ 1.02
COL5A1P20908 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A1P20908 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A1P20908 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A1P20908 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A1P20908 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL5A1P20908 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
COL5A1P20908 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
COL5A1P20908 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.4■■□□□ 1.02
COL5A1P20908 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A1P20908 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL5A1P20908 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
COL5A1P20908 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.4■■□□□ 1.02
COL5A1P20908 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.4■■□□□ 1.02
COL5A1P20908 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.4■■□□□ 1.02
COL5A1P20908 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.39■■□□□ 1.02
COL5A1P20908 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.02
COL5A1P20908 ABHD17AP1-201ENST00000358206 933 ntBASIC21.39■■□□□ 1.02
COL5A1P20908 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL5A1P20908 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL5A1P20908 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
COL5A1P20908 BX005040.4-201ENST00000637145 1518 ntBASIC21.39■■□□□ 1.01
COL5A1P20908 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
COL5A1P20908 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
COL5A1P20908 AL139125.2-201ENST00000623134 1869 ntBASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms