Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
VCANP13611 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC23.18■■□□□ 1.3
VCANP13611 AC083880.1-201ENST00000608266 535 ntBASIC23.18■■□□□ 1.3
VCANP13611 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.18■■□□□ 1.3
VCANP13611 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC23.18■■□□□ 1.3
VCANP13611 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
VCANP13611 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.17■■□□□ 1.3
VCANP13611 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCANP13611 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
VCANP13611 RHOD-202ENST00000532559 538 ntTSL 3 BASIC23.17■■□□□ 1.3
VCANP13611 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
VCANP13611 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCANP13611 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
VCANP13611 AC105036.2-201ENST00000569468 176 ntBASIC23.17■■□□□ 1.3
VCANP13611 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
VCANP13611 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
VCANP13611 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
VCANP13611 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
VCANP13611 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
VCANP13611 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
VCANP13611 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
VCANP13611 BX005040.4-201ENST00000637145 1518 ntBASIC23.15■■□□□ 1.3
VCANP13611 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
VCANP13611 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
VCANP13611 AC006058.3-201ENST00000606217 1069 ntBASIC23.15■■□□□ 1.3
VCANP13611 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC23.15■■□□□ 1.3
VCANP13611 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
VCANP13611 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
VCANP13611 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.15■■□□□ 1.3
VCANP13611 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC23.15■■□□□ 1.3
VCANP13611 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.15■■□□□ 1.3
VCANP13611 MME-217ENST00000616757 1315 ntTSL 5 BASIC23.15■■□□□ 1.3
VCANP13611 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
VCANP13611 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.15■■□□□ 1.3
VCANP13611 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.15■■□□□ 1.3
VCANP13611 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC23.14■■□□□ 1.3
VCANP13611 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.14■■□□□ 1.3
VCANP13611 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
VCANP13611 ESRRAP1-201ENST00000400596 1257 ntBASIC23.14■■□□□ 1.29
VCANP13611 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC23.14■■□□□ 1.29
VCANP13611 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.14■■□□□ 1.29
VCANP13611 RCN1P1-201ENST00000400413 996 ntBASIC23.14■■□□□ 1.29
VCANP13611 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
VCANP13611 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23.13■■□□□ 1.29
VCANP13611 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
VCANP13611 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
VCANP13611 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
VCANP13611 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.13■■□□□ 1.29
VCANP13611 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
VCANP13611 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.12■■□□□ 1.29
VCANP13611 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
VCANP13611 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.12■■□□□ 1.29
VCANP13611 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
VCANP13611 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
VCANP13611 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VCANP13611 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.12■■□□□ 1.29
VCANP13611 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
VCANP13611 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
VCANP13611 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
VCANP13611 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC23.12■■□□□ 1.29
VCANP13611 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC23.12■■□□□ 1.29
VCANP13611 AC133552.2-202ENST00000575694 574 ntBASIC23.12■■□□□ 1.29
VCANP13611 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
VCANP13611 AC097639.1-201ENST00000565519 1891 ntBASIC23.11■■□□□ 1.29
VCANP13611 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.11■■□□□ 1.29
VCANP13611 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC23.11■■□□□ 1.29
VCANP13611 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
VCANP13611 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
VCANP13611 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
VCANP13611 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.11■■□□□ 1.29
VCANP13611 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
VCANP13611 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
VCANP13611 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.1■■□□□ 1.29
VCANP13611 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
VCANP13611 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VCANP13611 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.1■■□□□ 1.29
VCANP13611 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.1■■□□□ 1.29
VCANP13611 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VCANP13611 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.1■■□□□ 1.29
VCANP13611 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.1■■□□□ 1.29
VCANP13611 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
VCANP13611 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
VCANP13611 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
VCANP13611 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
VCANP13611 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
VCANP13611 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.1■■□□□ 1.29
VCANP13611 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC23.1■■□□□ 1.29
VCANP13611 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.1■■□□□ 1.29
VCANP13611 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.09■■□□□ 1.29
VCANP13611 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
VCANP13611 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
VCANP13611 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.09■■□□□ 1.29
VCANP13611 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
VCANP13611 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.09■■□□□ 1.29
VCANP13611 UNC93B5-201ENST00000530315 699 ntBASIC23.09■■□□□ 1.29
VCANP13611 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
VCANP13611 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.09■■□□□ 1.29
VCANP13611 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
VCANP13611 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
VCANP13611 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms