Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
HOXD4P09016 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXD4P09016 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HOXD4P09016 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXD4P09016 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXD4P09016 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
HOXD4P09016 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXD4P09016 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.91■□□□□ 0.78
HOXD4P09016 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
HOXD4P09016 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXD4P09016 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXD4P09016 OR2I1P-207ENST00000453522 948 ntBASIC19.91■□□□□ 0.78
HOXD4P09016 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.91■□□□□ 0.78
HOXD4P09016 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
HOXD4P09016 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXD4P09016 AC138932.3-201ENST00000567634 1902 ntBASIC19.91■□□□□ 0.78
HOXD4P09016 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.91■□□□□ 0.78
HOXD4P09016 TSPY26P-201ENST00000476365 1326 ntBASIC19.91■□□□□ 0.78
HOXD4P09016 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXD4P09016 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXD4P09016 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.91■□□□□ 0.78
HOXD4P09016 SLC25A24-204ENST00000569674 2357 ntBASIC19.91■□□□□ 0.78
HOXD4P09016 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HOXD4P09016 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HOXD4P09016 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
HOXD4P09016 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HOXD4P09016 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXD4P09016 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HOXD4P09016 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXD4P09016 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.9■□□□□ 0.78
HOXD4P09016 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.9■□□□□ 0.78
HOXD4P09016 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.9■□□□□ 0.78
HOXD4P09016 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.9■□□□□ 0.78
HOXD4P09016 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
HOXD4P09016 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
HOXD4P09016 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXD4P09016 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXD4P09016 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HOXD4P09016 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.9■□□□□ 0.78
HOXD4P09016 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HOXD4P09016 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.9■□□□□ 0.78
HOXD4P09016 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.9■□□□□ 0.78
HOXD4P09016 AL139125.2-201ENST00000623134 1869 ntBASIC19.9■□□□□ 0.78
HOXD4P09016 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXD4P09016 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
HOXD4P09016 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXD4P09016 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXD4P09016 MIR572-201ENST00000384983 95 ntBASIC19.89■□□□□ 0.77
HOXD4P09016 AP005435.1-201ENST00000529293 1178 ntBASIC19.89■□□□□ 0.77
HOXD4P09016 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXD4P09016 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.89■□□□□ 0.77
HOXD4P09016 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.89■□□□□ 0.77
HOXD4P09016 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXD4P09016 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
HOXD4P09016 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXD4P09016 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXD4P09016 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXD4P09016 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.88■□□□□ 0.77
HOXD4P09016 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXD4P09016 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.88■□□□□ 0.77
HOXD4P09016 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.88■□□□□ 0.77
HOXD4P09016 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXD4P09016 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXD4P09016 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HOXD4P09016 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.87■□□□□ 0.77
HOXD4P09016 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
HOXD4P09016 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.87■□□□□ 0.77
HOXD4P09016 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HOXD4P09016 AL354811.1-201ENST00000610286 706 ntBASIC19.87■□□□□ 0.77
HOXD4P09016 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.87■□□□□ 0.77
HOXD4P09016 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXD4P09016 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXD4P09016 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXD4P09016 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXD4P09016 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXD4P09016 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXD4P09016 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.86■□□□□ 0.77
HOXD4P09016 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
HOXD4P09016 AC123595.1-201ENST00000440769 1046 ntBASIC19.86■□□□□ 0.77
HOXD4P09016 AC034268.1-201ENST00000441047 882 ntBASIC19.86■□□□□ 0.77
HOXD4P09016 YBX1P1-201ENST00000445822 960 ntBASIC19.86■□□□□ 0.77
HOXD4P09016 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.86■□□□□ 0.77
HOXD4P09016 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXD4P09016 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.86■□□□□ 0.77
HOXD4P09016 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXD4P09016 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXD4P09016 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.86■□□□□ 0.77
HOXD4P09016 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms