Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NKX2-2O95096 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX2-2O95096 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NKX2-2O95096 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.43■□□□□ 0.86
NKX2-2O95096 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NKX2-2O95096 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NKX2-2O95096 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NKX2-2O95096 AC087742.1-201ENST00000575880 1738 ntBASIC20.42■□□□□ 0.86
NKX2-2O95096 AC127496.7-201ENST00000625110 1798 ntBASIC20.42■□□□□ 0.86
NKX2-2O95096 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.42■□□□□ 0.86
NKX2-2O95096 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
NKX2-2O95096 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NKX2-2O95096 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
NKX2-2O95096 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
NKX2-2O95096 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-2O95096 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
NKX2-2O95096 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-2O95096 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
NKX2-2O95096 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.41■□□□□ 0.86
NKX2-2O95096 DUX4L19-201ENST00000557448 1267 ntBASIC20.41■□□□□ 0.86
NKX2-2O95096 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
NKX2-2O95096 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-2O95096 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-2O95096 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-2O95096 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-2O95096 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NKX2-2O95096 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
NKX2-2O95096 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.4■□□□□ 0.86
NKX2-2O95096 AL136116.3-201ENST00000402907 1138 ntBASIC20.4■□□□□ 0.86
NKX2-2O95096 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
NKX2-2O95096 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.4■□□□□ 0.86
NKX2-2O95096 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.4■□□□□ 0.86
NKX2-2O95096 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.4■□□□□ 0.86
NKX2-2O95096 LINC01960-201ENST00000563759 1884 ntBASIC20.39■□□□□ 0.86
NKX2-2O95096 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
NKX2-2O95096 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.39■□□□□ 0.85
NKX2-2O95096 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-2O95096 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-2O95096 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.39■□□□□ 0.85
NKX2-2O95096 AL138724.1-201ENST00000606771 1088 ntBASIC20.39■□□□□ 0.85
NKX2-2O95096 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-2O95096 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-2O95096 AL117328.2-201ENST00000624617 1940 ntBASIC20.39■□□□□ 0.85
NKX2-2O95096 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-2O95096 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-2O95096 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
NKX2-2O95096 SYT6-210ENST00000641643 1587 ntBASIC20.38■□□□□ 0.85
NKX2-2O95096 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-2O95096 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-2O95096 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-2O95096 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.38■□□□□ 0.85
NKX2-2O95096 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
NKX2-2O95096 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
NKX2-2O95096 SERBP1P1-201ENST00000396021 1160 ntBASIC20.38■□□□□ 0.85
NKX2-2O95096 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.38■□□□□ 0.85
NKX2-2O95096 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.38■□□□□ 0.85
NKX2-2O95096 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-2O95096 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
NKX2-2O95096 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-2O95096 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
NKX2-2O95096 GUSBP5-202ENST00000510805 1989 ntBASIC20.37■□□□□ 0.85
NKX2-2O95096 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
NKX2-2O95096 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-2O95096 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
NKX2-2O95096 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-2O95096 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.37■□□□□ 0.85
NKX2-2O95096 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-2O95096 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
NKX2-2O95096 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.37■□□□□ 0.85
NKX2-2O95096 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
NKX2-2O95096 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.37■□□□□ 0.85
NKX2-2O95096 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
NKX2-2O95096 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
NKX2-2O95096 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-2O95096 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-2O95096 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
NKX2-2O95096 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
NKX2-2O95096 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-2O95096 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-2O95096 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.36■□□□□ 0.85
NKX2-2O95096 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
NKX2-2O95096 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
NKX2-2O95096 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.36■□□□□ 0.85
NKX2-2O95096 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
NKX2-2O95096 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.36■□□□□ 0.85
NKX2-2O95096 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-2O95096 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-2O95096 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-2O95096 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-2O95096 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-2O95096 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.35■□□□□ 0.85
NKX2-2O95096 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-2O95096 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-2O95096 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
NKX2-2O95096 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-2O95096 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
NKX2-2O95096 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-2O95096 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-2O95096 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
NKX2-2O95096 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms