Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.09■□□□□ 0.97
SEMA3DO95025 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.09■□□□□ 0.97
SEMA3DO95025 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.09■□□□□ 0.97
SEMA3DO95025 AL512631.2-201ENST00000604634 923 ntBASIC21.09■□□□□ 0.97
SEMA3DO95025 AC233723.2-201ENST00000623798 2106 ntBASIC21.09■□□□□ 0.97
SEMA3DO95025 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.09■□□□□ 0.97
SEMA3DO95025 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.09■□□□□ 0.97
SEMA3DO95025 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SEMA3DO95025 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SEMA3DO95025 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SEMA3DO95025 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SEMA3DO95025 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SEMA3DO95025 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SEMA3DO95025 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SEMA3DO95025 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SEMA3DO95025 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SEMA3DO95025 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SEMA3DO95025 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SEMA3DO95025 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SEMA3DO95025 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
SEMA3DO95025 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.08■□□□□ 0.97
SEMA3DO95025 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SEMA3DO95025 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SEMA3DO95025 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SEMA3DO95025 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
SEMA3DO95025 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SEMA3DO95025 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SEMA3DO95025 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SEMA3DO95025 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.07■□□□□ 0.96
SEMA3DO95025 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.07■□□□□ 0.96
SEMA3DO95025 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.07■□□□□ 0.96
SEMA3DO95025 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SEMA3DO95025 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SEMA3DO95025 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SEMA3DO95025 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SEMA3DO95025 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SEMA3DO95025 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SEMA3DO95025 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SEMA3DO95025 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SEMA3DO95025 SRD5A1P1-201ENST00000442297 786 ntBASIC21.06■□□□□ 0.96
SEMA3DO95025 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.06■□□□□ 0.96
SEMA3DO95025 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SEMA3DO95025 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SEMA3DO95025 AC127496.7-201ENST00000625110 1798 ntBASIC21.05■□□□□ 0.96
SEMA3DO95025 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.05■□□□□ 0.96
SEMA3DO95025 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SEMA3DO95025 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.05■□□□□ 0.96
SEMA3DO95025 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SEMA3DO95025 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.05■□□□□ 0.96
SEMA3DO95025 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.05■□□□□ 0.96
SEMA3DO95025 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SEMA3DO95025 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.05■□□□□ 0.96
SEMA3DO95025 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.05■□□□□ 0.96
SEMA3DO95025 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SEMA3DO95025 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.05■□□□□ 0.96
SEMA3DO95025 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
SEMA3DO95025 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SEMA3DO95025 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.05■□□□□ 0.96
SEMA3DO95025 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.05■□□□□ 0.96
SEMA3DO95025 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SEMA3DO95025 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SEMA3DO95025 AL117328.2-201ENST00000624617 1940 ntBASIC21.04■□□□□ 0.96
SEMA3DO95025 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SEMA3DO95025 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SEMA3DO95025 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SEMA3DO95025 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.04■□□□□ 0.96
SEMA3DO95025 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.04■□□□□ 0.96
SEMA3DO95025 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SEMA3DO95025 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SEMA3DO95025 AC092171.4-201ENST00000609130 632 ntBASIC21.04■□□□□ 0.96
SEMA3DO95025 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.04■□□□□ 0.96
SEMA3DO95025 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SEMA3DO95025 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.04■□□□□ 0.96
SEMA3DO95025 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.04■□□□□ 0.96
SEMA3DO95025 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SEMA3DO95025 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SEMA3DO95025 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.03■□□□□ 0.96
SEMA3DO95025 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SEMA3DO95025 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.03■□□□□ 0.96
SEMA3DO95025 AC099791.2-201ENST00000605725 427 ntBASIC21.03■□□□□ 0.96
SEMA3DO95025 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.03■□□□□ 0.96
SEMA3DO95025 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.03■□□□□ 0.96
SEMA3DO95025 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 AC004687.1-201ENST00000579003 1625 ntBASIC21.03■□□□□ 0.96
SEMA3DO95025 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SEMA3DO95025 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SEMA3DO95025 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SEMA3DO95025 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SEMA3DO95025 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SEMA3DO95025 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SEMA3DO95025 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.02■□□□□ 0.96
SEMA3DO95025 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms