Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
LDB3O75112 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB3O75112 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
LDB3O75112 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDB3O75112 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
LDB3O75112 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.77■□□□□ 0.92
LDB3O75112 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
LDB3O75112 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.77■□□□□ 0.92
LDB3O75112 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.77■□□□□ 0.92
LDB3O75112 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.77■□□□□ 0.92
LDB3O75112 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
LDB3O75112 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LDB3O75112 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.77■□□□□ 0.91
LDB3O75112 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.77■□□□□ 0.91
LDB3O75112 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDB3O75112 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
LDB3O75112 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.76■□□□□ 0.91
LDB3O75112 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDB3O75112 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDB3O75112 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.76■□□□□ 0.91
LDB3O75112 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
LDB3O75112 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDB3O75112 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDB3O75112 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDB3O75112 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.76■□□□□ 0.91
LDB3O75112 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.76■□□□□ 0.91
LDB3O75112 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.76■□□□□ 0.91
LDB3O75112 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.76■□□□□ 0.91
LDB3O75112 MIR4767-201ENST00000582827 78 ntBASIC20.76■□□□□ 0.91
LDB3O75112 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.76■□□□□ 0.91
LDB3O75112 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
LDB3O75112 AC136469.2-201ENST00000623944 1028 ntBASIC20.76■□□□□ 0.91
LDB3O75112 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.76■□□□□ 0.91
LDB3O75112 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDB3O75112 C1orf229-201ENST00000623686 2258 ntBASIC20.76■□□□□ 0.91
LDB3O75112 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.76■□□□□ 0.91
LDB3O75112 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
LDB3O75112 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
LDB3O75112 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDB3O75112 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.75■□□□□ 0.91
LDB3O75112 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.75■□□□□ 0.91
LDB3O75112 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LDB3O75112 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.75■□□□□ 0.91
LDB3O75112 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LDB3O75112 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
LDB3O75112 AL139246.5-201ENST00000606645 996 ntBASIC20.75■□□□□ 0.91
LDB3O75112 AC106739.1-201ENST00000617035 715 ntBASIC20.75■□□□□ 0.91
LDB3O75112 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.75■□□□□ 0.91
LDB3O75112 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LDB3O75112 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LDB3O75112 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LDB3O75112 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
LDB3O75112 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LDB3O75112 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
LDB3O75112 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LDB3O75112 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
LDB3O75112 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LDB3O75112 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.74■□□□□ 0.91
LDB3O75112 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LDB3O75112 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LDB3O75112 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LDB3O75112 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LDB3O75112 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
LDB3O75112 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.74■□□□□ 0.91
LDB3O75112 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
LDB3O75112 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.74■□□□□ 0.91
LDB3O75112 AC068473.5-201ENST00000616428 2072 ntBASIC20.74■□□□□ 0.91
LDB3O75112 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
LDB3O75112 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.73■□□□□ 0.91
LDB3O75112 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDB3O75112 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDB3O75112 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.73■□□□□ 0.91
LDB3O75112 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.73■□□□□ 0.91
LDB3O75112 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LDB3O75112 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.73■□□□□ 0.91
LDB3O75112 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDB3O75112 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LDB3O75112 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
LDB3O75112 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LDB3O75112 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.72■□□□□ 0.91
LDB3O75112 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LDB3O75112 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.72■□□□□ 0.91
LDB3O75112 AC133561.1-201ENST00000568600 2415 ntBASIC20.72■□□□□ 0.91
LDB3O75112 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LDB3O75112 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LDB3O75112 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.72■□□□□ 0.91
LDB3O75112 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
LDB3O75112 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDB3O75112 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LDB3O75112 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDB3O75112 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDB3O75112 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDB3O75112 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.71■□□□□ 0.91
LDB3O75112 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDB3O75112 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDB3O75112 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
LDB3O75112 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
LDB3O75112 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDB3O75112 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
LDB3O75112 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms