Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.19■■□□□ 1.14
SHOX2O60902 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHOX2O60902 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC22.19■■□□□ 1.14
SHOX2O60902 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHOX2O60902 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SHOX2O60902 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHOX2O60902 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC22.18■■□□□ 1.14
SHOX2O60902 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHOX2O60902 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHOX2O60902 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SHOX2O60902 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC22.18■■□□□ 1.14
SHOX2O60902 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.18■■□□□ 1.14
SHOX2O60902 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
SHOX2O60902 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.18■■□□□ 1.14
SHOX2O60902 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.18■■□□□ 1.14
SHOX2O60902 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHOX2O60902 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.17■■□□□ 1.14
SHOX2O60902 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.17■■□□□ 1.14
SHOX2O60902 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHOX2O60902 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHOX2O60902 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
SHOX2O60902 FEM1AP4-201ENST00000443167 1987 ntBASIC22.17■■□□□ 1.14
SHOX2O60902 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.17■■□□□ 1.14
SHOX2O60902 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHOX2O60902 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SHOX2O60902 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC22.16■■□□□ 1.14
SHOX2O60902 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
SHOX2O60902 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC22.16■■□□□ 1.14
SHOX2O60902 AF106564.1-201ENST00000607058 2553 ntBASIC22.16■■□□□ 1.14
SHOX2O60902 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.16■■□□□ 1.14
SHOX2O60902 AL353803.4-201ENST00000565882 1934 ntBASIC22.16■■□□□ 1.14
SHOX2O60902 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHOX2O60902 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHOX2O60902 LINC01006-201ENST00000333319 2292 ntBASIC22.16■■□□□ 1.14
SHOX2O60902 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHOX2O60902 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHOX2O60902 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC22.15■■□□□ 1.14
SHOX2O60902 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC22.15■■□□□ 1.14
SHOX2O60902 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC22.15■■□□□ 1.14
SHOX2O60902 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.15■■□□□ 1.14
SHOX2O60902 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC22.15■■□□□ 1.14
SHOX2O60902 ABHD17AP4-201ENST00000411545 909 ntBASIC22.15■■□□□ 1.14
SHOX2O60902 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.15■■□□□ 1.14
SHOX2O60902 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHOX2O60902 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC22.15■■□□□ 1.14
SHOX2O60902 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
SHOX2O60902 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
SHOX2O60902 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SHOX2O60902 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
SHOX2O60902 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.13
SHOX2O60902 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.14■■□□□ 1.13
SHOX2O60902 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.14■■□□□ 1.13
SHOX2O60902 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.14■■□□□ 1.13
SHOX2O60902 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
SHOX2O60902 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHOX2O60902 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.14■■□□□ 1.13
SHOX2O60902 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC22.14■■□□□ 1.13
SHOX2O60902 GOLGA2P6-201ENST00000340929 2049 ntBASIC22.14■■□□□ 1.13
SHOX2O60902 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
SHOX2O60902 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
SHOX2O60902 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
SHOX2O60902 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC22.14■■□□□ 1.13
SHOX2O60902 Z98882.1-201ENST00000622160 2253 ntBASIC22.13■■□□□ 1.13
SHOX2O60902 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHOX2O60902 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHOX2O60902 KRT18P10-201ENST00000388836 1287 ntBASIC22.13■■□□□ 1.13
SHOX2O60902 METRNL-202ENST00000570778 967 ntTSL 5 BASIC22.13■■□□□ 1.13
SHOX2O60902 MIR3648-2-201ENST00000581792 180 ntBASIC22.13■■□□□ 1.13
SHOX2O60902 MIR3648-1-201ENST00000615959 180 ntBASIC22.13■■□□□ 1.13
SHOX2O60902 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
SHOX2O60902 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC22.13■■□□□ 1.13
SHOX2O60902 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHOX2O60902 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHOX2O60902 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHOX2O60902 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SHOX2O60902 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHOX2O60902 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.12■■□□□ 1.13
SHOX2O60902 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC22.12■■□□□ 1.13
SHOX2O60902 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SHOX2O60902 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHOX2O60902 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHOX2O60902 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHOX2O60902 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SHOX2O60902 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
SHOX2O60902 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHOX2O60902 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHOX2O60902 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC22.11■■□□□ 1.13
SHOX2O60902 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHOX2O60902 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
SHOX2O60902 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC22.11■■□□□ 1.13
SHOX2O60902 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms