Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PRKNO60260 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRKNO60260 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PRKNO60260 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.56■□□□□ 0.88
PRKNO60260 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PRKNO60260 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.56■□□□□ 0.88
PRKNO60260 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRKNO60260 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRKNO60260 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.55■□□□□ 0.88
PRKNO60260 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRKNO60260 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRKNO60260 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRKNO60260 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.55■□□□□ 0.88
PRKNO60260 AC099791.1-201ENST00000416440 715 ntBASIC20.55■□□□□ 0.88
PRKNO60260 SLC47A1P1-202ENST00000449666 945 ntBASIC20.55■□□□□ 0.88
PRKNO60260 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRKNO60260 AC010525.1-201ENST00000585559 441 ntBASIC20.55■□□□□ 0.88
PRKNO60260 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRKNO60260 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
PRKNO60260 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.54■□□□□ 0.88
PRKNO60260 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.54■□□□□ 0.88
PRKNO60260 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRKNO60260 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.54■□□□□ 0.88
PRKNO60260 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.54■□□□□ 0.88
PRKNO60260 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PRKNO60260 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PRKNO60260 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PRKNO60260 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRKNO60260 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
PRKNO60260 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PRKNO60260 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
PRKNO60260 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRKNO60260 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.53■□□□□ 0.88
PRKNO60260 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRKNO60260 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRKNO60260 BX842568.3-201ENST00000418104 571 ntBASIC20.53■□□□□ 0.88
PRKNO60260 ZNRF2P3-201ENST00000424200 374 ntBASIC20.53■□□□□ 0.88
PRKNO60260 AC091305.1-201ENST00000479476 895 ntBASIC20.53■□□□□ 0.88
PRKNO60260 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.53■□□□□ 0.88
PRKNO60260 AC027682.1-201ENST00000562846 899 ntBASIC20.53■□□□□ 0.88
PRKNO60260 CA15P2-201ENST00000611168 834 ntBASIC20.53■□□□□ 0.88
PRKNO60260 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PRKNO60260 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
PRKNO60260 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.53■□□□□ 0.88
PRKNO60260 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PRKNO60260 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRKNO60260 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PRKNO60260 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRKNO60260 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRKNO60260 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.52■□□□□ 0.88
PRKNO60260 RASA4CP-201ENST00000424092 1398 ntBASIC20.52■□□□□ 0.88
PRKNO60260 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRKNO60260 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.52■□□□□ 0.88
PRKNO60260 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PRKNO60260 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
PRKNO60260 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
PRKNO60260 AC233992.3-201ENST00000607491 485 ntBASIC20.52■□□□□ 0.88
PRKNO60260 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PRKNO60260 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PRKNO60260 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PRKNO60260 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PRKNO60260 AC105265.2-201ENST00000467189 838 ntBASIC20.51■□□□□ 0.87
PRKNO60260 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.51■□□□□ 0.87
PRKNO60260 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.51■□□□□ 0.87
PRKNO60260 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PRKNO60260 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.51■□□□□ 0.87
PRKNO60260 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PRKNO60260 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PRKNO60260 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PRKNO60260 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PRKNO60260 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PRKNO60260 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.5■□□□□ 0.87
PRKNO60260 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.5■□□□□ 0.87
PRKNO60260 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PRKNO60260 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PRKNO60260 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.5■□□□□ 0.87
PRKNO60260 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
PRKNO60260 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
PRKNO60260 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PRKNO60260 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PRKNO60260 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
PRKNO60260 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PRKNO60260 OR2I1P-207ENST00000453522 948 ntBASIC20.49■□□□□ 0.87
PRKNO60260 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PRKNO60260 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.49■□□□□ 0.87
PRKNO60260 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PRKNO60260 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
PRKNO60260 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PRKNO60260 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
PRKNO60260 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.49■□□□□ 0.87
PRKNO60260 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.48■□□□□ 0.87
PRKNO60260 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
PRKNO60260 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.48■□□□□ 0.87
PRKNO60260 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.48■□□□□ 0.87
PRKNO60260 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.48■□□□□ 0.87
PRKNO60260 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
PRKNO60260 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
PRKNO60260 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PRKNO60260 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PRKNO60260 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms