Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AL356740.2-201ENST00000601559 647 ntBASIC19.88■□□□□ 0.77
SSX4O60224 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.88■□□□□ 0.77
SSX4O60224 MIR6089-201ENST00000616698 64 ntBASIC19.88■□□□□ 0.77
SSX4O60224 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.88■□□□□ 0.77
SSX4O60224 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SSX4O60224 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SSX4O60224 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX4O60224 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.87■□□□□ 0.77
SSX4O60224 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
SSX4O60224 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX4O60224 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.87■□□□□ 0.77
SSX4O60224 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX4O60224 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.87■□□□□ 0.77
SSX4O60224 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX4O60224 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SSX4O60224 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.87■□□□□ 0.77
SSX4O60224 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX4O60224 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.86■□□□□ 0.77
SSX4O60224 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX4O60224 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.86■□□□□ 0.77
SSX4O60224 AL139246.5-201ENST00000606645 996 ntBASIC19.86■□□□□ 0.77
SSX4O60224 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.86■□□□□ 0.77
SSX4O60224 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SSX4O60224 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
SSX4O60224 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SSX4O60224 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX4O60224 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SSX4O60224 MIR638-201ENST00000385237 100 ntBASIC19.85■□□□□ 0.77
SSX4O60224 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX4O60224 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.85■□□□□ 0.77
SSX4O60224 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.85■□□□□ 0.77
SSX4O60224 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.85■□□□□ 0.77
SSX4O60224 MIR3621-201ENST00000580529 85 ntBASIC19.85■□□□□ 0.77
SSX4O60224 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SSX4O60224 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX4O60224 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX4O60224 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX4O60224 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SSX4O60224 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.84■□□□□ 0.77
SSX4O60224 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SSX4O60224 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.84■□□□□ 0.77
SSX4O60224 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.84■□□□□ 0.77
SSX4O60224 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.84■□□□□ 0.77
SSX4O60224 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.84■□□□□ 0.77
SSX4O60224 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.84■□□□□ 0.77
SSX4O60224 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.84■□□□□ 0.77
SSX4O60224 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SSX4O60224 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSX4O60224 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX4O60224 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSX4O60224 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX4O60224 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.83■□□□□ 0.77
SSX4O60224 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSX4O60224 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SSX4O60224 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
SSX4O60224 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSX4O60224 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SSX4O60224 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SSX4O60224 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SSX4O60224 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SSX4O60224 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.83■□□□□ 0.76
SSX4O60224 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SSX4O60224 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
SSX4O60224 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.83■□□□□ 0.76
SSX4O60224 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.83■□□□□ 0.76
SSX4O60224 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SSX4O60224 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.82■□□□□ 0.76
SSX4O60224 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.82■□□□□ 0.76
SSX4O60224 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SSX4O60224 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SSX4O60224 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SSX4O60224 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SSX4O60224 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SSX4O60224 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SSX4O60224 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SSX4O60224 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.81■□□□□ 0.76
SSX4O60224 AC092667.1-201ENST00000434301 2586 ntBASIC19.81■□□□□ 0.76
SSX4O60224 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms