Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB3O15347 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB3O15347 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
HMGB3O15347 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB3O15347 AC242852.2-201ENST00000615738 1807 ntBASIC17.74■□□□□ 0.43
HMGB3O15347 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB3O15347 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HMGB3O15347 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
HMGB3O15347 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
HMGB3O15347 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB3O15347 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB3O15347 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB3O15347 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB3O15347 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
HMGB3O15347 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGB3O15347 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB3O15347 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB3O15347 ZNRF2P2-203ENST00000454624 420 ntBASIC17.73■□□□□ 0.43
HMGB3O15347 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB3O15347 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB3O15347 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB3O15347 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGB3O15347 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB3O15347 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGB3O15347 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB3O15347 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HMGB3O15347 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB3O15347 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB3O15347 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB3O15347 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB3O15347 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.72■□□□□ 0.43
HMGB3O15347 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB3O15347 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB3O15347 METRNL-202ENST00000570778 967 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGB3O15347 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB3O15347 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB3O15347 SLC25A24-204ENST00000569674 2357 ntBASIC17.72■□□□□ 0.43
HMGB3O15347 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
HMGB3O15347 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.71■□□□□ 0.43
HMGB3O15347 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB3O15347 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGB3O15347 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB3O15347 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
HMGB3O15347 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB3O15347 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB3O15347 AC060814.1-201ENST00000554326 538 ntBASIC17.71■□□□□ 0.43
HMGB3O15347 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB3O15347 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
HMGB3O15347 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB3O15347 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
HMGB3O15347 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC17.7■□□□□ 0.42
HMGB3O15347 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB3O15347 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB3O15347 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGB3O15347 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB3O15347 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HMGB3O15347 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB3O15347 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HMGB3O15347 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB3O15347 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB3O15347 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
HMGB3O15347 RP9P-202ENST00000450133 1212 ntBASIC17.69■□□□□ 0.42
HMGB3O15347 AC093536.1-201ENST00000569153 554 ntBASIC17.69■□□□□ 0.42
HMGB3O15347 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB3O15347 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
HMGB3O15347 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB3O15347 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGB3O15347 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGB3O15347 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGB3O15347 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGB3O15347 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
HMGB3O15347 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB3O15347 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB3O15347 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB3O15347 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HMGB3O15347 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB3O15347 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGB3O15347 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB3O15347 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HMGB3O15347 RPS2P35-201ENST00000443417 897 ntBASIC17.68■□□□□ 0.42
HMGB3O15347 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB3O15347 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HMGB3O15347 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HMGB3O15347 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB3O15347 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGB3O15347 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGB3O15347 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGB3O15347 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms