Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
TRAV41A0A0B4J266 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV41A0A0B4J266 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV41A0A0B4J266 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV41A0A0B4J266 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV41A0A0B4J266 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 EDA-201ENST00000338901 1233 ntBASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 AC133561.4-201ENST00000566112 224 ntBASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.34■□□□□ 0.37
TRAV41A0A0B4J266 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV41A0A0B4J266 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV41A0A0B4J266 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 OR2I1P-207ENST00000453522 948 ntBASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV41A0A0B4J266 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 AL355001.2-201ENST00000620617 1191 ntBASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV41A0A0B4J266 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV41A0A0B4J266 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 BX842568.3-201ENST00000418104 571 ntBASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 SLC47A1P1-202ENST00000449666 945 ntBASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 STX4-202ENST00000394998 1498 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TRAV41A0A0B4J266 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRAV41A0A0B4J266 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms