Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.45■□□□□ 0.54
TRAV39A0A0B4J263 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV39A0A0B4J263 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV39A0A0B4J263 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV39A0A0B4J263 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV39A0A0B4J263 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.44■□□□□ 0.54
TRAV39A0A0B4J263 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 LINC00526-201ENST00000581067 1875 ntBASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRAV39A0A0B4J263 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAV39A0A0B4J263 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 AC080038.3-201ENST00000623346 1952 ntBASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 KRT16P3-201ENST00000439127 1283 ntBASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 FP325331.1-202ENST00000623531 1380 ntBASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
TRAV39A0A0B4J263 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 ECEL1P1-201ENST00000373592 1742 ntBASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 MIR6724-1-201ENST00000616420 92 ntBASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 MIR6724-2-201ENST00000616483 92 ntBASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 MIR6724-4-201ENST00000617390 92 ntBASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 MIR6724-3-201ENST00000622482 92 ntBASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 AC087742.1-201ENST00000575880 1738 ntBASIC18.4■□□□□ 0.54
TRAV39A0A0B4J263 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRAV39A0A0B4J263 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TRAV39A0A0B4J263 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TRAV39A0A0B4J263 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
TRAV39A0A0B4J263 ESRRAP2-201ENST00000418437 1549 ntBASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms