Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TSGA13-201ENST00000356588 1372 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 MEX3B-202ENST00000558133 4333 ntBASIC12.82□□□□□ -0.36
COL28A1Q2UY09 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 ACTG1P23-201ENST00000437653 1074 ntBASIC12.82□□□□□ -0.36
COL28A1Q2UY09 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 AC113398.1-201ENST00000464124 406 ntBASIC12.82□□□□□ -0.36
COL28A1Q2UY09 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 RPS5-205ENST00000598495 800 ntTSL 3 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 AC069061.4-201ENST00000581294 1347 ntBASIC12.82□□□□□ -0.36
COL28A1Q2UY09 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 STK3-218ENST00000617590 2485 ntTSL 5 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 AC064850.1-201ENST00000413279 1398 ntBASIC12.81□□□□□ -0.36
COL28A1Q2UY09 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 AP002761.4-201ENST00000565433 3361 ntBASIC12.81□□□□□ -0.36
COL28A1Q2UY09 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 OR7E155P-201ENST00000412208 1014 ntBASIC12.81□□□□□ -0.36
COL28A1Q2UY09 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 HLA-W-207ENST00000439514 771 ntBASIC12.81□□□□□ -0.36
COL28A1Q2UY09 SRP9P1-201ENST00000445874 261 ntBASIC12.81□□□□□ -0.36
COL28A1Q2UY09 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 AC015818.1-201ENST00000451011 244 ntBASIC12.81□□□□□ -0.36
COL28A1Q2UY09 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 MIR5091-201ENST00000578707 93 ntBASIC12.81□□□□□ -0.36
COL28A1Q2UY09 AC005332.2-201ENST00000590010 930 ntBASIC12.81□□□□□ -0.36
COL28A1Q2UY09 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC12.81□□□□□ -0.36
COL28A1Q2UY09 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC12.81□□□□□ -0.36
COL28A1Q2UY09 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms