Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 MAGEB1-201ENST00000378981 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 MEFV-209ENST00000541159 1888 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 DNPEP-220ENST00000523282 1662 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 PSMC4-201ENST00000157812 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC15.16■□□□□ 0.02
SMARCA1P28370 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 EVA1A-201ENST00000233712 1815 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 AIG1-203ENST00000367596 559 ntTSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SMARCA1P28370 PRADC1P1-201ENST00000412317 525 ntBASIC15.16■□□□□ 0.02
SMARCA1P28370 ALKBH2-202ENST00000429722 1159 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SMARCA1P28370 CITED1-206ENST00000431381 941 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 CITED1-207ENST00000445983 820 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 KRT18P66-201ENST00000452970 1269 ntBASIC15.16■□□□□ 0.02
SMARCA1P28370 AGPAT5P1-201ENST00000455855 1019 ntBASIC15.16■□□□□ 0.02
SMARCA1P28370 RN7SL684P-201ENST00000465665 294 ntBASIC15.16■□□□□ 0.02
SMARCA1P28370 PARP8-206ENST00000503665 572 ntTSL 4 BASIC15.16■□□□□ 0.02
SMARCA1P28370 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
SMARCA1P28370 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
SMARCA1P28370 MIR4763-201ENST00000581461 92 ntBASIC15.16■□□□□ 0.02
SMARCA1P28370 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC15.16■□□□□ 0.02
SMARCA1P28370 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 R3HDM2-215ENST00000634871 4092 ntTSL 5 BASIC15.16■□□□□ 0.02
SMARCA1P28370 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 AC091181.1-201ENST00000623762 2098 ntBASIC15.16■□□□□ 0.02
SMARCA1P28370 ZNF215-207ENST00000610573 1503 ntTSL 5 BASIC15.16■□□□□ 0.02
SMARCA1P28370 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 VPS26A-203ENST00000395098 2554 ntTSL 5 BASIC15.16■□□□□ 0.02
SMARCA1P28370 LILRB4-205ENST00000430952 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SMARCA1P28370 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC15.16■□□□□ 0.02
SMARCA1P28370 ARHGEF9-235ENST00000637723 2146 ntTSL 5 BASIC15.16■□□□□ 0.02
SMARCA1P28370 GAS8-201ENST00000268699 3185 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.16■□□□□ 0.02
SMARCA1P28370 TTC39A-204ENST00000371750 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SMARCA1P28370 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
SMARCA1P28370 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 AC124319.4-201ENST00000622931 2161 ntBASIC15.15■□□□□ 0.02
SMARCA1P28370 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 CYP2B7P-201ENST00000541697 1476 ntBASIC15.15■□□□□ 0.02
SMARCA1P28370 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 ZNF771-204ENST00000566625 2415 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 PTENP1-202ENST00000532280 3996 ntBASIC15.15■□□□□ 0.02
SMARCA1P28370 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 C16orf78-201ENST00000299191 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SMARCA1P28370 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
SMARCA1P28370 AF274858.1-201ENST00000406288 372 ntBASIC15.15■□□□□ 0.02
SMARCA1P28370 IDS-203ENST00000428056 1213 ntTSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 COL18A1-AS2-201ENST00000446475 552 ntTSL 4 BASIC15.15■□□□□ 0.02
SMARCA1P28370 RPSAP70-201ENST00000504462 864 ntBASIC15.15■□□□□ 0.02
SMARCA1P28370 KRT18P63-201ENST00000505463 979 ntBASIC15.15■□□□□ 0.02
SMARCA1P28370 BCRP4-201ENST00000506079 804 ntBASIC15.15■□□□□ 0.02
SMARCA1P28370 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC15.15■□□□□ 0.02
SMARCA1P28370 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC15.15■□□□□ 0.02
SMARCA1P28370 AC090971.1-201ENST00000559302 510 ntTSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC15.15■□□□□ 0.02
SMARCA1P28370 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC15.15■□□□□ 0.02
SMARCA1P28370 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC15.15■□□□□ 0.02
SMARCA1P28370 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC15.15■□□□□ 0.02
SMARCA1P28370 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC15.15■□□□□ 0.02
SMARCA1P28370 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 ZNF397-209ENST00000591206 1516 ntTSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 MED27-201ENST00000292035 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 CAMK2B-202ENST00000346990 1448 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SMARCA1P28370 GMPR2-201ENST00000348719 1684 ntTSL 5 BASIC15.15■□□□□ 0.02
SMARCA1P28370 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC15.15■□□□□ 0.02
SMARCA1P28370 JAML-202ENST00000356289 1944 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 ZNF143-203ENST00000396602 2947 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms