Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CCDC144A-204ENST00000360524 5830 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 NWD1-206ENST00000552788 6964 ntAPPRIS P5 TSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC239868.1-201ENST00000369385 493 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 TUBB2BP1-201ENST00000404155 871 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 HNRNPA1P2-207ENST00000432375 960 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC092638.2-201ENST00000441105 947 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC244197.1-201ENST00000456494 951 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC026803.1-201ENST00000569130 274 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 SNORD3B-2-202ENST00000571722 791 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 NUDT4P2-201ENST00000578341 546 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC107464.3-201ENST00000609172 737 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC002472.4-201ENST00000641915 272 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 PCDHB2-201ENST00000194155 4126 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A7P-201ENST00000382628 1395 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A23P-201ENST00000400136 1395 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A21P-201ENST00000510875 1396 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A15P-201ENST00000514465 1395 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A6P-201ENST00000515148 1394 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A16P-201ENST00000526662 1395 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A9P-201ENST00000527940 1395 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A5P-201ENST00000528738 1395 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A14P-201ENST00000530386 1395 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FAM90A13P-201ENST00000534703 1395 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 C1GALT1-205ENST00000436587 6235 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 WDR62-203ENST00000401500 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 STX3-207ENST00000633708 3111 ntTSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 PLEKHA5-203ENST00000429027 4762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 DR1-202ENST00000370272 10148 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC008040.5-201ENST00000599781 1781 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 RNF213-201ENST00000319921 5316 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AC027369.3-201ENST00000530465 3707 ntBASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 DYNC1I2-204ENST00000409317 2196 ntTSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC11.23□□□□□ -0.61
PDLIM3Q53GG5 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 RALGPS2-203ENST00000367634 7512 ntTSL 2 BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 HS6ST1-201ENST00000259241 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 MSH6-215ENST00000622629 4324 ntTSL 5 BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 PCDHGA6-201ENST00000517434 4775 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 ATAD2-201ENST00000287394 5565 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 GRM7-201ENST00000357716 4127 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PDLIM3Q53GG5 KLF8-202ENST00000374928 4821 ntTSL 2 BASIC11.22□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms