Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.98□□□□□ -0.33
COL28A1Q2UY09 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 MIR181D-201ENST00000384853 137 ntBASIC12.97□□□□□ -0.33
COL28A1Q2UY09 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 WDR54-202ENST00000409791 854 ntTSL 3 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 RPL3P2-204ENST00000413027 1203 ntBASIC12.97□□□□□ -0.33
COL28A1Q2UY09 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 RN7SL684P-201ENST00000465665 294 ntBASIC12.97□□□□□ -0.33
COL28A1Q2UY09 RPL29P2-201ENST00000488409 460 ntBASIC12.97□□□□□ -0.33
COL28A1Q2UY09 RN7SL87P-201ENST00000497657 288 ntBASIC12.97□□□□□ -0.33
COL28A1Q2UY09 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 KF455155.1-201ENST00000604493 303 ntBASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 AC134878.2-201ENST00000620700 1265 ntBASIC12.97□□□□□ -0.33
COL28A1Q2UY09 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 GOLGA8EP-201ENST00000530246 1959 ntBASIC12.97□□□□□ -0.33
COL28A1Q2UY09 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SLC9A3P3-201ENST00000457608 2229 ntBASIC12.97□□□□□ -0.33
COL28A1Q2UY09 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL28A1Q2UY09 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 AC117503.4-201ENST00000623229 1418 ntBASIC12.96□□□□□ -0.33
COL28A1Q2UY09 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 TP73-211ENST00000604074 4806 ntTSL 5 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 AL928654.5-201ENST00000624831 2501 ntBASIC12.96□□□□□ -0.33
COL28A1Q2UY09 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 AGAP10P-201ENST00000454844 2418 ntBASIC12.96□□□□□ -0.33
COL28A1Q2UY09 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL28A1Q2UY09 OR2W2P-201ENST00000406313 909 ntBASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms