Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
DDX56Q9NY93 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
DDX56Q9NY93 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.05■■□□□ 1.28
DDX56Q9NY93 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.05■■□□□ 1.28
DDX56Q9NY93 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
DDX56Q9NY93 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
DDX56Q9NY93 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
DDX56Q9NY93 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX56Q9NY93 C17orf82-201ENST00000623772 1530 ntBASIC23.04■■□□□ 1.28
DDX56Q9NY93 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
DDX56Q9NY93 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
DDX56Q9NY93 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.04■■□□□ 1.28
DDX56Q9NY93 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX56Q9NY93 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.04■■□□□ 1.28
DDX56Q9NY93 MIR6724-1-201ENST00000616420 92 ntBASIC23.04■■□□□ 1.28
DDX56Q9NY93 MIR6724-2-201ENST00000616483 92 ntBASIC23.04■■□□□ 1.28
DDX56Q9NY93 MIR6724-4-201ENST00000617390 92 ntBASIC23.04■■□□□ 1.28
DDX56Q9NY93 MIR6724-3-201ENST00000622482 92 ntBASIC23.04■■□□□ 1.28
DDX56Q9NY93 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX56Q9NY93 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX56Q9NY93 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX56Q9NY93 AC087742.1-201ENST00000575880 1738 ntBASIC23.03■■□□□ 1.28
DDX56Q9NY93 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
DDX56Q9NY93 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX56Q9NY93 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
DDX56Q9NY93 CREM-229ENST00000474362 1030 ntTSL 2 BASIC23.03■■□□□ 1.28
DDX56Q9NY93 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.03■■□□□ 1.28
DDX56Q9NY93 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
DDX56Q9NY93 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
DDX56Q9NY93 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX56Q9NY93 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX56Q9NY93 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC23.03■■□□□ 1.28
DDX56Q9NY93 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX56Q9NY93 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX56Q9NY93 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX56Q9NY93 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX56Q9NY93 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX56Q9NY93 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.02■■□□□ 1.28
DDX56Q9NY93 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX56Q9NY93 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC23.02■■□□□ 1.28
DDX56Q9NY93 UNC93B8-201ENST00000511903 705 ntBASIC23.02■■□□□ 1.28
DDX56Q9NY93 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.02■■□□□ 1.28
DDX56Q9NY93 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
DDX56Q9NY93 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX56Q9NY93 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.02■■□□□ 1.28
DDX56Q9NY93 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX56Q9NY93 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
DDX56Q9NY93 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
DDX56Q9NY93 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
DDX56Q9NY93 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
DDX56Q9NY93 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
DDX56Q9NY93 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
DDX56Q9NY93 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
DDX56Q9NY93 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
DDX56Q9NY93 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
DDX56Q9NY93 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
DDX56Q9NY93 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
DDX56Q9NY93 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
DDX56Q9NY93 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23■■□□□ 1.27
DDX56Q9NY93 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23■■□□□ 1.27
DDX56Q9NY93 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23■■□□□ 1.27
DDX56Q9NY93 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
DDX56Q9NY93 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
DDX56Q9NY93 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
DDX56Q9NY93 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
DDX56Q9NY93 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23■■□□□ 1.27
DDX56Q9NY93 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC23■■□□□ 1.27
DDX56Q9NY93 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23■■□□□ 1.27
DDX56Q9NY93 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
DDX56Q9NY93 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
DDX56Q9NY93 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.99■■□□□ 1.27
DDX56Q9NY93 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
DDX56Q9NY93 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
DDX56Q9NY93 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.99■■□□□ 1.27
DDX56Q9NY93 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.99■■□□□ 1.27
DDX56Q9NY93 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.99■■□□□ 1.27
DDX56Q9NY93 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
DDX56Q9NY93 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.98■■□□□ 1.27
DDX56Q9NY93 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
DDX56Q9NY93 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
DDX56Q9NY93 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
DDX56Q9NY93 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
DDX56Q9NY93 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.98■■□□□ 1.27
DDX56Q9NY93 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
DDX56Q9NY93 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC22.98■■□□□ 1.27
DDX56Q9NY93 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
DDX56Q9NY93 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
DDX56Q9NY93 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.98■■□□□ 1.27
DDX56Q9NY93 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.98■■□□□ 1.27
DDX56Q9NY93 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.98■■□□□ 1.27
DDX56Q9NY93 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms