Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.69■□□□□ 0.9
AMBRA1Q9C0C7 AL353803.4-201ENST00000565882 1934 ntBASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.68■□□□□ 0.9
AMBRA1Q9C0C7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 C11orf96-202ENST00000528572 1834 ntBASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AMBRA1Q9C0C7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.66■□□□□ 0.9
AMBRA1Q9C0C7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 AC009299.2-201ENST00000482477 511 ntBASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 AL035685.1-201ENST00000636663 812 ntBASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
AMBRA1Q9C0C7 AC092053.2-201ENST00000640557 1818 ntBASIC20.64■□□□□ 0.9
AMBRA1Q9C0C7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
AMBRA1Q9C0C7 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
AMBRA1Q9C0C7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
AMBRA1Q9C0C7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
AMBRA1Q9C0C7 FBXW4P1-201ENST00000426721 2239 ntBASIC20.63■□□□□ 0.89
AMBRA1Q9C0C7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
AMBRA1Q9C0C7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
AMBRA1Q9C0C7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
AMBRA1Q9C0C7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.63■□□□□ 0.89
AMBRA1Q9C0C7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.63■□□□□ 0.89
AMBRA1Q9C0C7 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
AMBRA1Q9C0C7 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.63■□□□□ 0.89
AMBRA1Q9C0C7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.62■□□□□ 0.89
AMBRA1Q9C0C7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms