Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.33■□□□□ 0.85
TIMP4Q99727 AL031432.3-201ENST00000607698 485 ntBASIC20.33■□□□□ 0.85
TIMP4Q99727 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.33■□□□□ 0.85
TIMP4Q99727 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.33■□□□□ 0.84
TIMP4Q99727 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TIMP4Q99727 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TIMP4Q99727 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TIMP4Q99727 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TIMP4Q99727 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.32■□□□□ 0.84
TIMP4Q99727 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.32■□□□□ 0.84
TIMP4Q99727 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TIMP4Q99727 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TIMP4Q99727 SUDS3P1-201ENST00000505831 966 ntBASIC20.32■□□□□ 0.84
TIMP4Q99727 AC142381.2-201ENST00000566120 298 ntBASIC20.32■□□□□ 0.84
TIMP4Q99727 AL355001.2-201ENST00000620617 1191 ntBASIC20.32■□□□□ 0.84
TIMP4Q99727 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TIMP4Q99727 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TIMP4Q99727 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.32■□□□□ 0.84
TIMP4Q99727 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
TIMP4Q99727 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.31■□□□□ 0.84
TIMP4Q99727 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.31■□□□□ 0.84
TIMP4Q99727 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TIMP4Q99727 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TIMP4Q99727 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TIMP4Q99727 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TIMP4Q99727 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
TIMP4Q99727 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TIMP4Q99727 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TIMP4Q99727 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
TIMP4Q99727 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TIMP4Q99727 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
TIMP4Q99727 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TIMP4Q99727 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.3■□□□□ 0.84
TIMP4Q99727 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.3■□□□□ 0.84
TIMP4Q99727 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TIMP4Q99727 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TIMP4Q99727 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TIMP4Q99727 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.3■□□□□ 0.84
TIMP4Q99727 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TIMP4Q99727 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TIMP4Q99727 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TIMP4Q99727 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
TIMP4Q99727 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
TIMP4Q99727 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.29■□□□□ 0.84
TIMP4Q99727 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TIMP4Q99727 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
TIMP4Q99727 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TIMP4Q99727 AL138724.1-201ENST00000606771 1088 ntBASIC20.29■□□□□ 0.84
TIMP4Q99727 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.29■□□□□ 0.84
TIMP4Q99727 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TIMP4Q99727 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TIMP4Q99727 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TIMP4Q99727 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TIMP4Q99727 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TIMP4Q99727 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TIMP4Q99727 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.28■□□□□ 0.84
TIMP4Q99727 MIR935-201ENST00000401179 91 ntBASIC20.28■□□□□ 0.84
TIMP4Q99727 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.28■□□□□ 0.84
TIMP4Q99727 LINC00565-201ENST00000562710 2331 ntBASIC20.28■□□□□ 0.84
TIMP4Q99727 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TIMP4Q99727 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TIMP4Q99727 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TIMP4Q99727 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.27■□□□□ 0.84
TIMP4Q99727 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TIMP4Q99727 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TIMP4Q99727 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TIMP4Q99727 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
TIMP4Q99727 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TIMP4Q99727 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TIMP4Q99727 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
TIMP4Q99727 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TIMP4Q99727 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.27■□□□□ 0.84
TIMP4Q99727 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.27■□□□□ 0.84
TIMP4Q99727 AC006455.2-201ENST00000429931 906 ntBASIC20.27■□□□□ 0.84
TIMP4Q99727 MIR4767-201ENST00000582827 78 ntBASIC20.27■□□□□ 0.84
TIMP4Q99727 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.27■□□□□ 0.84
TIMP4Q99727 AC011298.3-201ENST00000615796 283 ntBASIC20.27■□□□□ 0.84
TIMP4Q99727 AC009086.3-201ENST00000623486 1008 ntBASIC20.27■□□□□ 0.84
TIMP4Q99727 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TIMP4Q99727 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TIMP4Q99727 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TIMP4Q99727 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TIMP4Q99727 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.26■□□□□ 0.83
TIMP4Q99727 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TIMP4Q99727 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.26■□□□□ 0.83
TIMP4Q99727 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.26■□□□□ 0.83
TIMP4Q99727 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.26■□□□□ 0.83
TIMP4Q99727 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
TIMP4Q99727 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TIMP4Q99727 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TIMP4Q99727 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TIMP4Q99727 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TIMP4Q99727 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TIMP4Q99727 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TIMP4Q99727 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
TIMP4Q99727 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TIMP4Q99727 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
TIMP4Q99727 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms