Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL12A1Q99715 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL12A1Q99715 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL12A1Q99715 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL12A1Q99715 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.64■□□□□ 0.73
COL12A1Q99715 FAM210CP-201ENST00000445714 574 ntBASIC19.64■□□□□ 0.73
COL12A1Q99715 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.64■□□□□ 0.73
COL12A1Q99715 AC005181.1-201ENST00000604782 1256 ntBASIC19.64■□□□□ 0.73
COL12A1Q99715 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL12A1Q99715 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL12A1Q99715 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.64■□□□□ 0.73
COL12A1Q99715 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.64■□□□□ 0.73
COL12A1Q99715 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.64■□□□□ 0.73
COL12A1Q99715 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
COL12A1Q99715 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.64■□□□□ 0.73
COL12A1Q99715 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL12A1Q99715 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL12A1Q99715 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.63■□□□□ 0.73
COL12A1Q99715 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL12A1Q99715 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL12A1Q99715 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.63■□□□□ 0.73
COL12A1Q99715 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL12A1Q99715 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
COL12A1Q99715 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL12A1Q99715 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.62■□□□□ 0.73
COL12A1Q99715 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
COL12A1Q99715 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL12A1Q99715 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.62■□□□□ 0.73
COL12A1Q99715 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL12A1Q99715 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
COL12A1Q99715 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL12A1Q99715 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL12A1Q99715 DUX4L16-201ENST00000555130 1264 ntBASIC19.62■□□□□ 0.73
COL12A1Q99715 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.62■□□□□ 0.73
COL12A1Q99715 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL12A1Q99715 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.62■□□□□ 0.73
COL12A1Q99715 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.62■□□□□ 0.73
COL12A1Q99715 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL12A1Q99715 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
COL12A1Q99715 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.61■□□□□ 0.73
COL12A1Q99715 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.61■□□□□ 0.73
COL12A1Q99715 AL158047.1-201ENST00000445918 881 ntBASIC19.61■□□□□ 0.73
COL12A1Q99715 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL12A1Q99715 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL12A1Q99715 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
COL12A1Q99715 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.61■□□□□ 0.73
COL12A1Q99715 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL12A1Q99715 SHF-207ENST00000560540 2062 ntTSL 5 BASIC19.61■□□□□ 0.73
COL12A1Q99715 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL12A1Q99715 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL12A1Q99715 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL12A1Q99715 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL12A1Q99715 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL12A1Q99715 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.6■□□□□ 0.73
COL12A1Q99715 AL121832.2-201ENST00000610979 668 ntBASIC19.6■□□□□ 0.73
COL12A1Q99715 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL12A1Q99715 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL12A1Q99715 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL12A1Q99715 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
COL12A1Q99715 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.6■□□□□ 0.73
COL12A1Q99715 RPS2P4-201ENST00000476944 856 ntBASIC19.6■□□□□ 0.73
COL12A1Q99715 AC010331.1-201ENST00000611423 582 ntBASIC19.6■□□□□ 0.73
COL12A1Q99715 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL12A1Q99715 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL12A1Q99715 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.6■□□□□ 0.73
COL12A1Q99715 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.6■□□□□ 0.73
COL12A1Q99715 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.6■□□□□ 0.73
COL12A1Q99715 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL12A1Q99715 AC010501.1-201ENST00000606270 1962 ntBASIC19.59■□□□□ 0.73
COL12A1Q99715 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL12A1Q99715 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.59■□□□□ 0.73
COL12A1Q99715 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL12A1Q99715 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL12A1Q99715 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL12A1Q99715 AF201337.1-201ENST00000520239 748 ntBASIC19.59■□□□□ 0.73
COL12A1Q99715 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
COL12A1Q99715 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.59■□□□□ 0.73
COL12A1Q99715 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL12A1Q99715 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL12A1Q99715 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
COL12A1Q99715 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.59■□□□□ 0.73
COL12A1Q99715 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.59■□□□□ 0.73
COL12A1Q99715 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.59■□□□□ 0.73
COL12A1Q99715 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.59■□□□□ 0.73
COL12A1Q99715 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL12A1Q99715 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.59■□□□□ 0.73
COL12A1Q99715 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL12A1Q99715 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
COL12A1Q99715 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL12A1Q99715 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL12A1Q99715 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL12A1Q99715 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL12A1Q99715 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL12A1Q99715 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
COL12A1Q99715 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL12A1Q99715 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL12A1Q99715 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.58■□□□□ 0.72
COL12A1Q99715 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL12A1Q99715 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL12A1Q99715 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms