Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
VPS35Q96QK1 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.98■■□□□ 1.11
VPS35Q96QK1 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS35Q96QK1 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.98■■□□□ 1.11
VPS35Q96QK1 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
VPS35Q96QK1 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.98■■□□□ 1.11
VPS35Q96QK1 MIR4767-201ENST00000582827 78 ntBASIC21.98■■□□□ 1.11
VPS35Q96QK1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
VPS35Q96QK1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
VPS35Q96QK1 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
VPS35Q96QK1 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS35Q96QK1 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS35Q96QK1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS35Q96QK1 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.97■■□□□ 1.11
VPS35Q96QK1 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.97■■□□□ 1.11
VPS35Q96QK1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS35Q96QK1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VPS35Q96QK1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VPS35Q96QK1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.97■■□□□ 1.11
VPS35Q96QK1 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.97■■□□□ 1.11
VPS35Q96QK1 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
VPS35Q96QK1 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS35Q96QK1 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.97■■□□□ 1.11
VPS35Q96QK1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.97■■□□□ 1.11
VPS35Q96QK1 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VPS35Q96QK1 DUSP8P5-201ENST00000422884 1815 ntBASIC21.96■■□□□ 1.11
VPS35Q96QK1 EDA-201ENST00000338901 1233 ntBASIC21.96■■□□□ 1.11
VPS35Q96QK1 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VPS35Q96QK1 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.96■■□□□ 1.11
VPS35Q96QK1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS35Q96QK1 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
VPS35Q96QK1 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS35Q96QK1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS35Q96QK1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
VPS35Q96QK1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS35Q96QK1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
VPS35Q96QK1 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VPS35Q96QK1 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS35Q96QK1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS35Q96QK1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS35Q96QK1 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS35Q96QK1 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VPS35Q96QK1 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VPS35Q96QK1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS35Q96QK1 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS35Q96QK1 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS35Q96QK1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS35Q96QK1 MIR638-201ENST00000385237 100 ntBASIC21.94■■□□□ 1.1
VPS35Q96QK1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
VPS35Q96QK1 OR2I1P-207ENST00000453522 948 ntBASIC21.94■■□□□ 1.1
VPS35Q96QK1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS35Q96QK1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS35Q96QK1 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS35Q96QK1 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS35Q96QK1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS35Q96QK1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS35Q96QK1 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
VPS35Q96QK1 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS35Q96QK1 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS35Q96QK1 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS35Q96QK1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.93■■□□□ 1.1
VPS35Q96QK1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.93■■□□□ 1.1
VPS35Q96QK1 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS35Q96QK1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.92■■□□□ 1.1
VPS35Q96QK1 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS35Q96QK1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
VPS35Q96QK1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS35Q96QK1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS35Q96QK1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS35Q96QK1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS35Q96QK1 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.92■■□□□ 1.1
VPS35Q96QK1 AL031432.3-201ENST00000607698 485 ntBASIC21.92■■□□□ 1.1
VPS35Q96QK1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS35Q96QK1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.92■■□□□ 1.1
VPS35Q96QK1 AL355001.2-201ENST00000620617 1191 ntBASIC21.92■■□□□ 1.1
VPS35Q96QK1 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
VPS35Q96QK1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.92■■□□□ 1.1
VPS35Q96QK1 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS35Q96QK1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS35Q96QK1 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS35Q96QK1 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
VPS35Q96QK1 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS35Q96QK1 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS35Q96QK1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.91■■□□□ 1.1
VPS35Q96QK1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.91■■□□□ 1.1
VPS35Q96QK1 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS35Q96QK1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.91■■□□□ 1.1
VPS35Q96QK1 AC004687.1-201ENST00000579003 1625 ntBASIC21.91■■□□□ 1.1
VPS35Q96QK1 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS35Q96QK1 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms