Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL21A1Q96P44 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL21A1Q96P44 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.85■□□□□ 0.93
COL21A1Q96P44 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL21A1Q96P44 AC131212.1-201ENST00000613771 668 ntBASIC20.85■□□□□ 0.93
COL21A1Q96P44 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL21A1Q96P44 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL21A1Q96P44 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL21A1Q96P44 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL21A1Q96P44 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COL21A1Q96P44 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL21A1Q96P44 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.84■□□□□ 0.93
COL21A1Q96P44 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL21A1Q96P44 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL21A1Q96P44 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
COL21A1Q96P44 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
COL21A1Q96P44 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL21A1Q96P44 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL21A1Q96P44 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.84■□□□□ 0.93
COL21A1Q96P44 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.84■□□□□ 0.93
COL21A1Q96P44 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.84■□□□□ 0.93
COL21A1Q96P44 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.84■□□□□ 0.93
COL21A1Q96P44 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL21A1Q96P44 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL21A1Q96P44 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
COL21A1Q96P44 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL21A1Q96P44 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL21A1Q96P44 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.83■□□□□ 0.93
COL21A1Q96P44 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL21A1Q96P44 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL21A1Q96P44 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.83■□□□□ 0.93
COL21A1Q96P44 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.83■□□□□ 0.93
COL21A1Q96P44 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.83■□□□□ 0.93
COL21A1Q96P44 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
COL21A1Q96P44 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.83■□□□□ 0.92
COL21A1Q96P44 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL21A1Q96P44 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL21A1Q96P44 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL21A1Q96P44 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.82■□□□□ 0.92
COL21A1Q96P44 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.82■□□□□ 0.92
COL21A1Q96P44 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.82■□□□□ 0.92
COL21A1Q96P44 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL21A1Q96P44 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL21A1Q96P44 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.81■□□□□ 0.92
COL21A1Q96P44 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL21A1Q96P44 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.81■□□□□ 0.92
COL21A1Q96P44 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.81■□□□□ 0.92
COL21A1Q96P44 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.81■□□□□ 0.92
COL21A1Q96P44 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.81■□□□□ 0.92
COL21A1Q96P44 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL21A1Q96P44 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL21A1Q96P44 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL21A1Q96P44 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
COL21A1Q96P44 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.8■□□□□ 0.92
COL21A1Q96P44 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.8■□□□□ 0.92
COL21A1Q96P44 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.8■□□□□ 0.92
COL21A1Q96P44 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
COL21A1Q96P44 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.8■□□□□ 0.92
COL21A1Q96P44 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL21A1Q96P44 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL21A1Q96P44 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL21A1Q96P44 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL21A1Q96P44 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.8■□□□□ 0.92
COL21A1Q96P44 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.8■□□□□ 0.92
COL21A1Q96P44 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL21A1Q96P44 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL21A1Q96P44 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.79■□□□□ 0.92
COL21A1Q96P44 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.79■□□□□ 0.92
COL21A1Q96P44 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL21A1Q96P44 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL21A1Q96P44 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL21A1Q96P44 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL21A1Q96P44 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL21A1Q96P44 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL21A1Q96P44 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL21A1Q96P44 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL21A1Q96P44 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL21A1Q96P44 AL353803.4-201ENST00000565882 1934 ntBASIC20.78■□□□□ 0.92
COL21A1Q96P44 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL21A1Q96P44 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL21A1Q96P44 LINC00526-201ENST00000581067 1875 ntBASIC20.78■□□□□ 0.92
COL21A1Q96P44 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL21A1Q96P44 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL21A1Q96P44 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL21A1Q96P44 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL21A1Q96P44 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
COL21A1Q96P44 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.78■□□□□ 0.92
COL21A1Q96P44 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL21A1Q96P44 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
COL21A1Q96P44 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL21A1Q96P44 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL21A1Q96P44 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL21A1Q96P44 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL21A1Q96P44 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.77■□□□□ 0.92
COL21A1Q96P44 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
COL21A1Q96P44 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL21A1Q96P44 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.77■□□□□ 0.92
COL21A1Q96P44 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL21A1Q96P44 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.77■□□□□ 0.92
COL21A1Q96P44 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms