Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
LRCH3Q96II8 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.18■■□□□ 1.46
LRCH3Q96II8 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC24.18■■□□□ 1.46
LRCH3Q96II8 DUSP5P2-201ENST00000426873 1033 ntBASIC24.18■■□□□ 1.46
LRCH3Q96II8 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRCH3Q96II8 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
LRCH3Q96II8 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC24.17■■□□□ 1.46
LRCH3Q96II8 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRCH3Q96II8 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
LRCH3Q96II8 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
LRCH3Q96II8 RNA5SP413-201ENST00000516373 109 ntBASIC24.17■■□□□ 1.46
LRCH3Q96II8 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC24.17■■□□□ 1.46
LRCH3Q96II8 AC005181.1-201ENST00000604782 1256 ntBASIC24.17■■□□□ 1.46
LRCH3Q96II8 AC141586.4-201ENST00000624558 1573 ntBASIC24.16■■□□□ 1.46
LRCH3Q96II8 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
LRCH3Q96II8 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRCH3Q96II8 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC24.16■■□□□ 1.46
LRCH3Q96II8 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
LRCH3Q96II8 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC24.16■■□□□ 1.46
LRCH3Q96II8 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC24.16■■□□□ 1.46
LRCH3Q96II8 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC24.16■■□□□ 1.46
LRCH3Q96II8 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
LRCH3Q96II8 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
LRCH3Q96II8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC24.15■■□□□ 1.46
LRCH3Q96II8 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
LRCH3Q96II8 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC24.15■■□□□ 1.46
LRCH3Q96II8 RPS2P4-201ENST00000476944 856 ntBASIC24.15■■□□□ 1.46
LRCH3Q96II8 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.15■■□□□ 1.46
LRCH3Q96II8 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRCH3Q96II8 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
LRCH3Q96II8 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
LRCH3Q96II8 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
LRCH3Q96II8 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
LRCH3Q96II8 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC24.14■■□□□ 1.45
LRCH3Q96II8 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
LRCH3Q96II8 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.14■■□□□ 1.45
LRCH3Q96II8 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC24.14■■□□□ 1.45
LRCH3Q96II8 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.14■■□□□ 1.45
LRCH3Q96II8 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
LRCH3Q96II8 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRCH3Q96II8 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRCH3Q96II8 AC073210.2-201ENST00000430369 194 ntBASIC24.13■■□□□ 1.45
LRCH3Q96II8 GCSHP5-201ENST00000443090 522 ntBASIC24.13■■□□□ 1.45
LRCH3Q96II8 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC24.13■■□□□ 1.45
LRCH3Q96II8 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LRCH3Q96II8 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC24.13■■□□□ 1.45
LRCH3Q96II8 MAX-217ENST00000557277 728 ntTSL 3 BASIC24.13■■□□□ 1.45
LRCH3Q96II8 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRCH3Q96II8 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRCH3Q96II8 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LRCH3Q96II8 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LRCH3Q96II8 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRCH3Q96II8 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRCH3Q96II8 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
LRCH3Q96II8 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC24.12■■□□□ 1.45
LRCH3Q96II8 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.12■■□□□ 1.45
LRCH3Q96II8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC24.12■■□□□ 1.45
LRCH3Q96II8 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.12■■□□□ 1.45
LRCH3Q96II8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.12■■□□□ 1.45
LRCH3Q96II8 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRCH3Q96II8 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
LRCH3Q96II8 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRCH3Q96II8 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRCH3Q96II8 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.11■■□□□ 1.45
LRCH3Q96II8 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRCH3Q96II8 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRCH3Q96II8 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRCH3Q96II8 AC231657.2-201ENST00000624556 255 ntBASIC24.11■■□□□ 1.45
LRCH3Q96II8 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
LRCH3Q96II8 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
LRCH3Q96II8 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRCH3Q96II8 AC097639.1-201ENST00000565519 1891 ntBASIC24.11■■□□□ 1.45
LRCH3Q96II8 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
LRCH3Q96II8 AC007322.1-201ENST00000426983 750 ntBASIC24.1■■□□□ 1.45
LRCH3Q96II8 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC24.1■■□□□ 1.45
LRCH3Q96II8 OR2I1P-207ENST00000453522 948 ntBASIC24.1■■□□□ 1.45
LRCH3Q96II8 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC24.1■■□□□ 1.45
LRCH3Q96II8 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC24.1■■□□□ 1.45
LRCH3Q96II8 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LRCH3Q96II8 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRCH3Q96II8 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
LRCH3Q96II8 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LRCH3Q96II8 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
LRCH3Q96II8 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRCH3Q96II8 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRCH3Q96II8 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.1■■□□□ 1.45
LRCH3Q96II8 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
LRCH3Q96II8 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
LRCH3Q96II8 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.09■■□□□ 1.45
LRCH3Q96II8 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
LRCH3Q96II8 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
LRCH3Q96II8 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
LRCH3Q96II8 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
LRCH3Q96II8 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.09■■□□□ 1.45
LRCH3Q96II8 AC010331.1-201ENST00000611423 582 ntBASIC24.09■■□□□ 1.45
LRCH3Q96II8 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC24.09■■□□□ 1.45
LRCH3Q96II8 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
LRCH3Q96II8 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC24.08■■□□□ 1.45
LRCH3Q96II8 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
LRCH3Q96II8 SLC7A5P1-201ENST00000568957 537 ntBASIC24.08■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms