Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.49■□□□□ 0.87
DEPDC4Q8N2C3 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 AC239859.2-201ENST00000444165 318 ntBASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
DEPDC4Q8N2C3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
DEPDC4Q8N2C3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
DEPDC4Q8N2C3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
DEPDC4Q8N2C3 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 AC120024.1-201ENST00000562672 995 ntBASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.45■□□□□ 0.86
DEPDC4Q8N2C3 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
DEPDC4Q8N2C3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
DEPDC4Q8N2C3 AC092053.2-201ENST00000640557 1818 ntBASIC20.43■□□□□ 0.86
DEPDC4Q8N2C3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
DEPDC4Q8N2C3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
DEPDC4Q8N2C3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
DEPDC4Q8N2C3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
DEPDC4Q8N2C3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
DEPDC4Q8N2C3 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.42■□□□□ 0.86
DEPDC4Q8N2C3 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
DEPDC4Q8N2C3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
DEPDC4Q8N2C3 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
DEPDC4Q8N2C3 GUSBP5-201ENST00000418136 578 ntBASIC20.42■□□□□ 0.86
DEPDC4Q8N2C3 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
DEPDC4Q8N2C3 AC011551.1-201ENST00000614101 683 ntBASIC20.42■□□□□ 0.86
DEPDC4Q8N2C3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
DEPDC4Q8N2C3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
DEPDC4Q8N2C3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms