Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC28AQ8IWP9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCDC28AQ8IWP9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 SLC6A10P-202ENST00000431994 2058 ntBASIC18.42■□□□□ 0.54
CCDC28AQ8IWP9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 AC005229.4-201ENST00000610085 2198 ntBASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CCDC28AQ8IWP9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC28AQ8IWP9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC28AQ8IWP9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC28AQ8IWP9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 AL158211.5-201ENST00000623583 2518 ntBASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC28AQ8IWP9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 MLEC-202ENST00000412616 841 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC28AQ8IWP9 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC28AQ8IWP9 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms